KEGG   PATHWAY: liz00020
Entry
liz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lichenihabitans sp. PAMC28606
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
liz00020  Citrate cycle (TCA cycle)
liz00020

Module
liz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:liz00020]
liz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:liz00020]
liz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:liz00020]
liz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:liz00020]
Other DBs
GO: 0006099
Organism
Lichenihabitans sp. PAMC28606 [GN:liz]
Gene
LGH83_03725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LGH83_03730  [KO:K00627] [EC:2.3.1.12]
LGH83_03735  [KO:K00162] [EC:1.2.4.1]
LGH83_03740  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LGH83_04885  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LGH83_07110  [KO:K00031] [EC:1.1.1.42]
LGH83_09670  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LGH83_11140  [KO:K00240] [EC:1.3.5.1]
LGH83_11145  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LGH83_11150  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LGH83_11155  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LGH83_12315  acnA; aconitate hydratase AcnA [KO:K27802]
LGH83_13040  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LGH83_13045  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LGH83_13050  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LGH83_13055  [KO:K00164] [EC:1.2.4.2]
LGH83_13060  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LGH83_17205  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
liz00010  Glycolysis / Gluconeogenesis
liz00053  Ascorbate and aldarate metabolism
liz00061  Fatty acid biosynthesis
liz00071  Fatty acid degradation
liz00190  Oxidative phosphorylation
liz00220  Arginine biosynthesis
liz00250  Alanine, aspartate and glutamate metabolism
liz00280  Valine, leucine and isoleucine degradation
liz00350  Tyrosine metabolism
liz00470  D-Amino acid metabolism
liz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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