KEGG   PATHWAY: lmr00010
Entry
lmr00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Listeria monocytogenes R479a (serotype 1/2a)
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmr00010  Glycolysis / Gluconeogenesis
lmr00010

Module
lmr_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:lmr00010]
lmr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:lmr00010]
lmr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmr00010]
Other DBs
GO: 0006096 0006094
Organism
Listeria monocytogenes R479a (serotype 1/2a) [GN:lmr]
Gene
LMR479A_1425  glcK; glucose kinase [KO:K25026] [EC:2.7.1.2]
LMR479A_2491  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
LMR479A_1665  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
LMR479A_0848  fbp; fructose-1,6-bisphosphatase [KO:K04041] [EC:3.1.3.11]
LMR479A_0370  Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
LMR479A_2245  gatY; D-tagatose-1,6-bisphosphate aldolase subunit gatY [KO:K01624] [EC:4.1.2.13]
LMR479A_2246  conserved protein of unknown function [KO:K01624] [EC:4.1.2.13]
LMR479A_0357  tpiA; Triosephosphate isomerase 2 [KO:K01803] [EC:5.3.1.1]
LMR479A_2582  tpiA; triose phosphate isomerase [KO:K01803] [EC:5.3.1.1]
LMR479A_2584  gapA; glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
LMR479A_2583  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
LMR479A_2319  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
LMR479A_2581  pgm; phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
LMR479A_2580  eno; enolase [KO:K01689] [EC:4.2.1.11]
LMR479A_1664  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
LMR479A_1977  ppdK; Pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
LMR479A_1080  pdhA; pyruvate dehydrogenase (E1 alpha subunit) [KO:K00161] [EC:1.2.4.1]
LMR479A_1081  pdhB; pyruvate dehydrogenase (E1 beta subunit) [KO:K00162] [EC:1.2.4.1]
LMR479A_1082  pdhC; pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) [KO:K00627] [EC:2.3.1.12]
LMR479A_1083  pdhD; dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
LMR479A_1458  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
LMR479A_0847  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
LMR479A_0219  ldh; L-lactate dehydrogenase [KO:K00016] [EC:1.1.1.27]
LMR479A_1627  ldh; L-lactate dehydrogenase 2 [KO:K00016] [EC:1.1.1.27]
LMR479A_1766  L-2-hydroxyisocaproate dehydrogenase [KO:K00016] [EC:1.1.1.27]
LMR479A_1731  ADH; Aldehyde-alcohol dehydrogenase 2 [Includes: Alcohol dehydrogenase; Acetaldehyde dehydrogenase] [KO:K04072] [EC:1.2.1.10 1.1.1.1]
LMR479A_2857  ytcI; putative acyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
LMR479A_2601  conserved protein of unknown function [KO:K01785] [EC:5.1.3.3]
LMR479A_2600  pgcA; alpha-phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
LMR479A_0533  licH; 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
LMR479A_0548  licH; 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
LMR479A_0940  bglH; Aryl-phospho-beta-D-glucosidase BglH [KO:K01223] [EC:3.2.1.86]
LMR479A_2900  bglC; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_2910  bglH; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_0279  bglH; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_0290  bglC; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_0332  bglH; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_0758  bglH; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_0018  bglH; aryl-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_0586  gmuD; mannoside-phospho-beta-d-glucosidase [KO:K01223] [EC:3.2.1.86]
LMR479A_1043  putative PTS system, glucose-specific, IIA component [KO:K02777] [EC:2.7.1.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmr00020  Citrate cycle (TCA cycle)
lmr00030  Pentose phosphate pathway
lmr00500  Starch and sucrose metabolism
lmr00620  Pyruvate metabolism
lmr00640  Propanoate metabolism
KO pathway
ko00010   
LinkDB

DBGET integrated database retrieval system