KEGG   PATHWAY: magq00020
Entry
magq00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Magnetospira sp. QH-2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
magq00020  Citrate cycle (TCA cycle)
magq00020

Module
magq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:magq00020]
magq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:magq00020]
magq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:magq00020]
magq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:magq00020]
magq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:magq00020]
Other DBs
GO: 0006099
Organism
Magnetospira sp. QH-2 [GN:magq]
Gene
MGMAQ_0864  fumA; fumarase A or B (fumarate hydratase class I) [KO:K01676] [EC:4.2.1.2]
MGMAQ_1744  porC; Pyruvate synthase subunit porC [KO:K00172] [EC:1.2.7.1]
MGMAQ_1745  porA; Pyruvate synthase subunit porA [KO:K00169] [EC:1.2.7.1]
MGMAQ_1746  porB; Pyruvate synthase subunit porB [KO:K00170] [EC:1.2.7.1]
MGMAQ_2049  lpd; Dihydrolipoyl dehydrogenase Lpd(E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
MGMAQ_2050  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex (E2) (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex) [KO:K00627] [EC:2.3.1.12]
MGMAQ_2051  pdhB; Pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
MGMAQ_2052  pdhA; Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
MGMAQ_2078  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MGMAQ_2432  icd; Isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) [KO:K00031] [EC:1.1.1.42]
MGMAQ_2596  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MGMAQ_2685  acnB; Aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MGMAQ_3000  [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MGMAQ_3001  [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MGMAQ_3176  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MGMAQ_3187  sdhC; Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MGMAQ_3188  sdhD; Succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MGMAQ_3189  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MGMAQ_3190  sdhB; Succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MGMAQ_3367  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
MGMAQ_3368  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
MGMAQ_3369  frdC; Fumarate reductase, subunit C [KO:K00246]
MGMAQ_3370  frdD; Fumarate reductase subunit D [KO:K00247]
MGMAQ_3621  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MGMAQ_3622  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MGMAQ_3623  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MGMAQ_3624  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MGMAQ_3625  sucB; Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MGMAQ_3626  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
magq00010  Glycolysis / Gluconeogenesis
magq00053  Ascorbate and aldarate metabolism
magq00061  Fatty acid biosynthesis
magq00071  Fatty acid degradation
magq00190  Oxidative phosphorylation
magq00220  Arginine biosynthesis
magq00250  Alanine, aspartate and glutamate metabolism
magq00280  Valine, leucine and isoleucine degradation
magq00350  Tyrosine metabolism
magq00470  D-Amino acid metabolism
magq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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