KEGG   PATHWAY: mbd00020
Entry
mbd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Melittangium boletus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbd00020  Citrate cycle (TCA cycle)
mbd00020

Module
mbd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbd00020]
mbd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbd00020]
mbd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbd00020]
mbd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbd00020]
Other DBs
GO: 0006099
Organism
Melittangium boletus [GN:mbd]
Gene
MEBOL_003907  hypothetical protein [KO:K01647] [EC:2.3.3.1]
MEBOL_006850  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
MEBOL_004872  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MEBOL_006869  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MEBOL_001779  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
MEBOL_001780  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MEBOL_006201  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MEBOL_006874  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MEBOL_006873  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MEBOL_006390  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
MEBOL_006871  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MEBOL_006872  succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
MEBOL_004514  succinate dehydrogenase [KO:K00241]
MEBOL_003831  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
MEBOL_002095  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MEBOL_006870  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MEBOL_004731  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MEBOL_000558  Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
MEBOL_000557  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MEBOL_000556  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MEBOL_006203  dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbd00010  Glycolysis / Gluconeogenesis
mbd00053  Ascorbate and aldarate metabolism
mbd00061  Fatty acid biosynthesis
mbd00071  Fatty acid degradation
mbd00190  Oxidative phosphorylation
mbd00220  Arginine biosynthesis
mbd00250  Alanine, aspartate and glutamate metabolism
mbd00280  Valine, leucine and isoleucine degradation
mbd00350  Tyrosine metabolism
mbd00470  D-Amino acid metabolism
mbd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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