KEGG   PATHWAY: mcal00020
Entry
mcal00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mus caroli (Ryukyu mouse)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcal00020  Citrate cycle (TCA cycle)
mcal00020

Module
mcal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcal00020]
mcal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcal00020]
mcal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcal00020]
mcal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcal00020]
mcal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcal00020]
Other DBs
GO: 0006099
Organism
Mus caroli (Ryukyu mouse) [GN:mcal]
Gene
110283952  Pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
110284994  [KO:K00031] [EC:1.1.1.42]
110285247  Pc; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
110286532  Pdha1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
110286607  Idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110290800  Fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
110291389  Pdha2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
110292283  Aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
110293052  Sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
110293546  Sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
110294957  Mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110295345  Idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
110295662  Suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110296292  Suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110297563  Idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
110297767  [KO:K00030] [EC:1.1.1.41]
110301094  Dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
110301150  Idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
110302243  Sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
110302888  Cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
110304226  Mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
110304306  Acly; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
110305771  Ogdh; 2-oxoglutarate dehydrogenase, mitochondrial isoform X2 [KO:K00164] [EC:1.2.4.2]
110306416  Dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
110306906  Dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
110307604  Sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
110309029  Pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
110309037  Ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
110309202  Pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
110309505  Sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110310024  Aco2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
110310423  Idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcal00010  Glycolysis / Gluconeogenesis
mcal00053  Ascorbate and aldarate metabolism
mcal00061  Fatty acid biosynthesis
mcal00062  Fatty acid elongation
mcal00071  Fatty acid degradation
mcal00190  Oxidative phosphorylation
mcal00220  Arginine biosynthesis
mcal00250  Alanine, aspartate and glutamate metabolism
mcal00280  Valine, leucine and isoleucine degradation
mcal00350  Tyrosine metabolism
mcal00470  D-Amino acid metabolism
mcal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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