KEGG   PATHWAY: mcep00020
Entry
mcep00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mugil cephalus (flathead mullet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcep00020  Citrate cycle (TCA cycle)
mcep00020

Module
mcep_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcep00020]
mcep_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcep00020]
mcep_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcep00020]
mcep_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcep00020]
mcep_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcep00020]
Other DBs
GO: 0006099
Organism
Mugil cephalus (flathead mullet) [GN:mcep]
Gene
124995382  [KO:K00161] [EC:1.2.4.1]
124995700  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
124996847  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
124997453  [KO:K01681] [EC:4.2.1.3]
124998451  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
124998717  [KO:K00658] [EC:2.3.1.61]
125003567  [KO:K00025] [EC:1.1.1.37]
125004548  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125005569  [KO:K00030] [EC:1.1.1.41]
125005664  [KO:K00031] [EC:1.1.1.42]
125005809  [KO:K01958] [EC:6.4.1.1]
125006310  pdhB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
125006743  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
125007168  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125007286  sdhB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
125007432  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
125007780  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
125009779  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
125010079  sdhC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
125011838  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase A (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
125013591  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
125014338  [KO:K00235] [EC:1.3.5.1]
125014582  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
125014961  dldH; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
125015169  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
125015257  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
125015532  [KO:K00030] [EC:1.1.1.41]
125015753  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
125016340  sdhA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
125017522  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125017868  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
125018531  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
125019339  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
125020901  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
125021051  dlaT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
125022626  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
125022821  aco2; LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
125024118  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
125024179  dlsT; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcep00010  Glycolysis / Gluconeogenesis
mcep00053  Ascorbate and aldarate metabolism
mcep00061  Fatty acid biosynthesis
mcep00062  Fatty acid elongation
mcep00071  Fatty acid degradation
mcep00190  Oxidative phosphorylation
mcep00220  Arginine biosynthesis
mcep00250  Alanine, aspartate and glutamate metabolism
mcep00280  Valine, leucine and isoleucine degradation
mcep00350  Tyrosine metabolism
mcep00470  D-Amino acid metabolism
mcep00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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