KEGG   PATHWAY: mhaa00020
Entry
mhaa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marivirga harenae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhaa00020  Citrate cycle (TCA cycle)
mhaa00020

Module
mhaa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhaa00020]
mhaa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhaa00020]
mhaa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhaa00020]
mhaa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhaa00020]
mhaa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhaa00020]
Other DBs
GO: 0006099
Organism
Marivirga harenae [GN:mhaa]
Gene
Q3Y49_16315  citrate synthase [KO:K01647] [EC:2.3.3.1]
Q3Y49_16905  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Q3Y49_12040  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Q3Y49_02030  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q3Y49_11330  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q3Y49_03200  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Q3Y49_13940  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
Q3Y49_03205  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
Q3Y49_13525  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
Q3Y49_03215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q3Y49_09610  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q3Y49_14550  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Q3Y49_14555  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Q3Y49_17855  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Q3Y49_13075  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Q3Y49_01815  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q3Y49_01810  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Q3Y49_01820  succinate dehydrogenase cytochrome b subunit [KO:K00241]
Q3Y49_06150  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Q3Y49_16700  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q3Y49_16910  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Q3Y49_15495  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Q3Y49_04450  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Q3Y49_16360  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Q3Y49_16070  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Q3Y49_14505  2-oxoacid:acceptor oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhaa00010  Glycolysis / Gluconeogenesis
mhaa00053  Ascorbate and aldarate metabolism
mhaa00061  Fatty acid biosynthesis
mhaa00071  Fatty acid degradation
mhaa00190  Oxidative phosphorylation
mhaa00220  Arginine biosynthesis
mhaa00250  Alanine, aspartate and glutamate metabolism
mhaa00280  Valine, leucine and isoleucine degradation
mhaa00350  Tyrosine metabolism
mhaa00470  D-Amino acid metabolism
mhaa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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