KEGG   PATHWAY: mhad00020
Entry
mhad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium haemophilum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhad00020  Citrate cycle (TCA cycle)
mhad00020

Module
mhad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhad00020]
mhad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhad00020]
mhad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhad00020]
mhad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhad00020]
mhad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhad00020]
Other DBs
GO: 0006099
Organism
Mycobacterium haemophilum [GN:mhad]
Gene
B586_05960  hypothetical protein [KO:K01647] [EC:2.3.3.1]
B586_05950  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
B586_13210  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
B586_02045  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B586_17965  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
B586_07815  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B586_19710  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B586_08855  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B586_08860  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B586_06280  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
B586_06275  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
B586_01020  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
B586_17895  fumarate reductase [KO:K00239] [EC:1.3.5.1]
B586_01025  fumarate reductase [KO:K00240] [EC:1.3.5.1]
B586_17900  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
B586_17885  succinate dehydrogenase [KO:K00241]
B586_17890  succinate dehydrogenase [KO:K00242]
B586_07070  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B586_07795  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B586_15085  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
B586_15530  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
B586_01295  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
B586_09915  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
B586_16840  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
B586_16835  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
B586_16830  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
B586_10100  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhad00010  Glycolysis / Gluconeogenesis
mhad00053  Ascorbate and aldarate metabolism
mhad00061  Fatty acid biosynthesis
mhad00071  Fatty acid degradation
mhad00190  Oxidative phosphorylation
mhad00220  Arginine biosynthesis
mhad00250  Alanine, aspartate and glutamate metabolism
mhad00280  Valine, leucine and isoleucine degradation
mhad00350  Tyrosine metabolism
mhad00470  D-Amino acid metabolism
mhad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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