KEGG   PATHWAY: mhar00020
Entry
mhar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mariluticola halotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhar00020  Citrate cycle (TCA cycle)
mhar00020

Module
mhar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhar00020]
mhar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhar00020]
mhar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhar00020]
mhar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhar00020]
mhar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhar00020]
Other DBs
GO: 0006099
Organism
Mariluticola halotolerans [GN:mhar]
Gene
L1P08_01625  [KO:K01677] [EC:4.2.1.2]
L1P08_01630  [KO:K01678] [EC:4.2.1.2]
L1P08_02740  [KO:K01647] [EC:2.3.3.1]
L1P08_02745  [KO:K01647] [EC:2.3.3.1]
L1P08_02960  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
L1P08_03075  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
L1P08_03080  [KO:K00162] [EC:1.2.4.1]
L1P08_03085  [KO:K00627] [EC:2.3.1.12]
L1P08_03095  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L1P08_05260  [KO:K00031] [EC:1.1.1.42]
L1P08_06090  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
L1P08_09670  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L1P08_11430  acnA; aconitate hydratase AcnA [KO:K27802]
L1P08_11800  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
L1P08_11805  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
L1P08_11810  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L1P08_11815  [KO:K00240] [EC:1.3.5.1]
L1P08_11835  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L1P08_11840  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L1P08_11845  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L1P08_11850  [KO:K00164] [EC:1.2.4.2]
L1P08_11855  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
L1P08_11865  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L1P08_12335  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
L1P08_14640  [KO:K01677] [EC:4.2.1.2]
L1P08_14645  [KO:K01678] [EC:4.2.1.2]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhar00010  Glycolysis / Gluconeogenesis
mhar00053  Ascorbate and aldarate metabolism
mhar00061  Fatty acid biosynthesis
mhar00071  Fatty acid degradation
mhar00190  Oxidative phosphorylation
mhar00220  Arginine biosynthesis
mhar00250  Alanine, aspartate and glutamate metabolism
mhar00280  Valine, leucine and isoleucine degradation
mhar00350  Tyrosine metabolism
mhar00470  D-Amino acid metabolism
mhar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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