KEGG   PATHWAY: mhaw00020
Entry
mhaw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Micromonospora halotolerans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mhaw00020  Citrate cycle (TCA cycle)
mhaw00020

Module
mhaw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mhaw00020]
mhaw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mhaw00020]
mhaw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mhaw00020]
mhaw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mhaw00020]
mhaw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mhaw00020]
Other DBs
GO: 0006099
Organism
Micromonospora halotolerans [GN:mhaw]
Gene
RMN56_31830  citrate synthase [KO:K01647] [EC:2.3.3.1]
RMN56_09005  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
RMN56_22000  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RMN56_16010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RMN56_16765  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
RMN56_20125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RMN56_08425  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RMN56_08430  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RMN56_15930  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RMN56_15925  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RMN56_01390  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RMN56_16200  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RMN56_01395  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RMN56_16195  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RMN56_01385  succinate dehydrogenase cytochrome b subunit [KO:K00241]
RMN56_13620  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RMN56_13630  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RMN56_16000  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RMN56_07410  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
RMN56_05065  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
RMN56_19405  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
RMN56_20120  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mhaw00010  Glycolysis / Gluconeogenesis
mhaw00053  Ascorbate and aldarate metabolism
mhaw00061  Fatty acid biosynthesis
mhaw00071  Fatty acid degradation
mhaw00190  Oxidative phosphorylation
mhaw00220  Arginine biosynthesis
mhaw00250  Alanine, aspartate and glutamate metabolism
mhaw00280  Valine, leucine and isoleucine degradation
mhaw00350  Tyrosine metabolism
mhaw00470  D-Amino acid metabolism
mhaw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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