KEGG   PATHWAY: mlit00020
Entry
mlit00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Metabacillus litoralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mlit00020  Citrate cycle (TCA cycle)
mlit00020

Module
mlit_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mlit00020]
mlit_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mlit00020]
mlit_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mlit00020]
mlit_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mlit00020]
mlit_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mlit00020]
Other DBs
GO: 0006099
Organism
Metabacillus litoralis [GN:mlit]
Gene
KDJ21_011845  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
KDJ21_020355  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KDJ21_011850  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KDJ21_015560  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KDJ21_015565  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KDJ21_013900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDJ21_019010  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDJ21_022055  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDJ21_020800  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KDJ21_020795  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KDJ21_021275  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KDJ21_021280  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KDJ21_012085  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KDJ21_012090  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KDJ21_012080  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
KDJ21_002210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KDJ21_009665  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KDJ21_011855  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KDJ21_009180  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KDJ21_021930  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KDJ21_011225  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KDJ21_022070  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KDJ21_022065  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KDJ21_019025  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KDJ21_022060  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mlit00010  Glycolysis / Gluconeogenesis
mlit00053  Ascorbate and aldarate metabolism
mlit00061  Fatty acid biosynthesis
mlit00071  Fatty acid degradation
mlit00190  Oxidative phosphorylation
mlit00220  Arginine biosynthesis
mlit00250  Alanine, aspartate and glutamate metabolism
mlit00280  Valine, leucine and isoleucine degradation
mlit00350  Tyrosine metabolism
mlit00470  D-Amino acid metabolism
mlit00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system