KEGG   PATHWAY: mmar00020
Entry
mmar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Modestobacter italicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmar00020  Citrate cycle (TCA cycle)
mmar00020

Module
mmar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmar00020]
mmar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmar00020]
mmar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmar00020]
mmar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmar00020]
mmar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmar00020]
Other DBs
GO: 0006099
Organism
Modestobacter italicus [GN:mmar]
Gene
MODMU_0879  citA; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MODMU_1051  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MODMU_1052  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MODMU_1104  sdhB; Succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
MODMU_1105  sdhA; Succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
MODMU_1106  sdhC; Succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
MODMU_1659  [KO:K00382] [EC:1.8.1.4]
MODMU_1853  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MODMU_2423  [KO:K00240] [EC:1.3.5.1]
MODMU_2424  [KO:K00239] [EC:1.3.5.1]
MODMU_2911  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MODMU_3077  [KO:K01958] [EC:6.4.1.1]
MODMU_3385  citA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
MODMU_3441  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MODMU_3549  bfmBC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MODMU_3550  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MODMU_3591  acnA; aconitate hydratase 1 [KO:K27802]
MODMU_4568  sucA; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MODMU_4824  icd; isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) [KO:K00031] [EC:1.1.1.42]
MODMU_4825  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MODMU_4834  sucD; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding [KO:K01902] [EC:6.2.1.5]
MODMU_4835  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MODMU_4952  korA; 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MODMU_4953  korB; 2-oxoacid:ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MODMU_5267  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MODMU_5300  pyc; Pyruvate carboxylase (fragment) [KO:K01958] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmar00010  Glycolysis / Gluconeogenesis
mmar00053  Ascorbate and aldarate metabolism
mmar00061  Fatty acid biosynthesis
mmar00071  Fatty acid degradation
mmar00190  Oxidative phosphorylation
mmar00220  Arginine biosynthesis
mmar00250  Alanine, aspartate and glutamate metabolism
mmar00280  Valine, leucine and isoleucine degradation
mmar00350  Tyrosine metabolism
mmar00470  D-Amino acid metabolism
mmar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system