KEGG   PATHWAY: mmc00020
Entry
mmc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium sp. MCS
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mmc00020  Citrate cycle (TCA cycle)
mmc00020

Module
mmc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mmc00020]
mmc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mmc00020]
mmc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mmc00020]
mmc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mmc00020]
mmc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mmc00020]
Other DBs
GO: 0006099
Organism
Mycobacterium sp. MCS [GN:mmc]
Gene
Mmcs_4456  citrate synthase [KO:K01647] [EC:2.3.3.1]
Mmcs_4459  citrate synthase [KO:K01647] [EC:2.3.3.1]
Mmcs_2449  aconitase [KO:K01681] [EC:4.2.1.3]
Mmcs_1209  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Mmcs_3973  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Mmcs_0631  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mmcs_3567  pyruvate flavodoxin/ferredoxin oxidoreductase-like protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mmcs_3566  thiamine pyrophosphate enzyme-like TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mmcs_4326  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Mmcs_4327  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Mmcs_0253  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Mmcs_1228  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Mmcs_1635  fumarate reductase/succinate dehydrogenase flavoprotein-like protein [KO:K00239] [EC:1.3.5.1]
Mmcs_0252  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Mmcs_1227  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Mmcs_1230  succinate dehydrogenase subunit C [KO:K00241]
Mmcs_1229  succinate dehydrogenase subunit D [KO:K00242]
Mmcs_4122  fumarase [KO:K01679] [EC:4.2.1.2]
Mmcs_2069  Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
Mmcs_1943  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Mmcs_0176  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Mmcs_3362  2-oxo-acid dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Mmcs_1091  Pyruvate dehydrogenase (lipoamide) [KO:K00161] [EC:1.2.4.1]
Mmcs_1092  Transketolase, central region [KO:K00162] [EC:1.2.4.1]
Mmcs_1093  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Mmcs_3313  2-oxoglutarate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
Mmcs_4865  Pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mmc00010  Glycolysis / Gluconeogenesis
mmc00053  Ascorbate and aldarate metabolism
mmc00061  Fatty acid biosynthesis
mmc00071  Fatty acid degradation
mmc00190  Oxidative phosphorylation
mmc00220  Arginine biosynthesis
mmc00250  Alanine, aspartate and glutamate metabolism
mmc00280  Valine, leucine and isoleucine degradation
mmc00350  Tyrosine metabolism
mmc00470  D-Amino acid metabolism
mmc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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