KEGG   PATHWAY: mpao00020
Entry
mpao00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Microbacterium paraoxydans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mpao00020  Citrate cycle (TCA cycle)
mpao00020

Module
mpao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mpao00020]
mpao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mpao00020]
mpao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mpao00020]
mpao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mpao00020]
mpao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mpao00020]
Other DBs
GO: 0006099
Organism
Microbacterium paraoxydans [GN:mpao]
Gene
IZR02_05520  citrate synthase [KO:K01647] [EC:2.3.3.1]
IZR02_08725  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IZR02_04375  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IZR02_06095  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IZR02_08815  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IZR02_10415  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IZR02_04320  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IZR02_04315  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IZR02_11505  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IZR02_02945  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
IZR02_11510  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IZR02_11495  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IZR02_11500  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
IZR02_05180  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IZR02_02460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IZR02_12535  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IZR02_10385  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
IZR02_04910  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IZR02_09095  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
IZR02_08820  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mpao00010  Glycolysis / Gluconeogenesis
mpao00053  Ascorbate and aldarate metabolism
mpao00061  Fatty acid biosynthesis
mpao00071  Fatty acid degradation
mpao00190  Oxidative phosphorylation
mpao00220  Arginine biosynthesis
mpao00250  Alanine, aspartate and glutamate metabolism
mpao00280  Valine, leucine and isoleucine degradation
mpao00350  Tyrosine metabolism
mpao00470  D-Amino acid metabolism
mpao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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