KEGG   PATHWAY: mprf00020
Entry
mprf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinomonas profundi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mprf00020  Citrate cycle (TCA cycle)
mprf00020

Module
mprf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mprf00020]
mprf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mprf00020]
mprf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mprf00020]
mprf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mprf00020]
mprf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mprf00020]
Other DBs
GO: 0006099
Organism
Marinomonas profundi [GN:mprf]
Gene
J8N69_00315  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
J8N69_16340  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
J8N69_02905  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
J8N69_00290  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
J8N69_00285  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
J8N69_00280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J8N69_08245  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
J8N69_00270  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
J8N69_00275  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
J8N69_00300  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
J8N69_00295  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
J8N69_00310  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
J8N69_00305  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
J8N69_15495  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
J8N69_05725  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
J8N69_09815  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
J8N69_06115  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
J8N69_06110  oadA; sodium-extruding oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
J8N69_03925  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
J8N69_15650  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
J8N69_15655  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mprf00010  Glycolysis / Gluconeogenesis
mprf00053  Ascorbate and aldarate metabolism
mprf00061  Fatty acid biosynthesis
mprf00071  Fatty acid degradation
mprf00190  Oxidative phosphorylation
mprf00220  Arginine biosynthesis
mprf00250  Alanine, aspartate and glutamate metabolism
mprf00280  Valine, leucine and isoleucine degradation
mprf00350  Tyrosine metabolism
mprf00470  D-Amino acid metabolism
mprf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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