KEGG   PATHWAY: mtl00020
Entry
mtl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis CCDC5180
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtl00020  Citrate cycle (TCA cycle)
mtl00020

Module
mtl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtl00020]
mtl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtl00020]
mtl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtl00020]
mtl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtl00020]
mtl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtl00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis CCDC5180 [GN:mtl]
Gene
CCDC5180_1036  citrate synthase [KO:K01647] [EC:2.3.3.1]
CCDC5180_0814  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
CCDC5180_0821  citrate synthase I gltA2 [KO:K01647] [EC:2.3.3.1]
CCDC5180_1363  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CCDC5180_0060  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CCDC5180_3047  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CCDC5180_1144  alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CCDC5180_0427  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CCDC5180_2236  ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CCDC5180_2235  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CCDC5180_0869  succinyl-CoA synthetase (alpha chain) sucD [KO:K01902] [EC:6.2.1.5]
CCDC5180_0868  succinyl-CoA synthetase subunit beta sucC [KO:K01903] [EC:6.2.1.5]
CCDC5180_0230  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CCDC5180_3028  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CCDC5180_0229  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CCDC5180_3029  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CCDC5180_3026  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
CCDC5180_3027  succinate dehydrogenase hydrophobic membrane anchor subunit sdhD [KO:K00242]
CCDC5180_1436  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CCDC5180_1437  fumarate reductase frdC [KO:K00245] [EC:1.3.5.1]
CCDC5180_1438  fumarate reductase frdC [KO:K00246]
CCDC5180_1439  putative 4Fe-4S binding domain protein [KO:K00247]
CCDC5180_1006  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CCDC5180_1139  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CCDC5180_2581  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CCDC5180_2689  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CCDC5180_0194  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CCDC5180_2050  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
CCDC5180_2023  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtl00010  Glycolysis / Gluconeogenesis
mtl00053  Ascorbate and aldarate metabolism
mtl00061  Fatty acid biosynthesis
mtl00071  Fatty acid degradation
mtl00190  Oxidative phosphorylation
mtl00220  Arginine biosynthesis
mtl00250  Alanine, aspartate and glutamate metabolism
mtl00280  Valine, leucine and isoleucine degradation
mtl00350  Tyrosine metabolism
mtl00470  D-Amino acid metabolism
mtl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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