KEGG   PATHWAY: mtv00020
Entry
mtv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis H37Rv
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtv00020  Citrate cycle (TCA cycle)
mtv00020

Module
mtv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtv00020]
mtv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtv00020]
mtv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtv00020]
mtv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtv00020]
mtv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtv00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis H37Rv [GN:mtv]
Gene
RVBD_0889c  citrate synthase II CitA [KO:K01647] [EC:2.3.3.1]
RVBD_0896  citrate synthase I GltA2 [KO:K01647] [EC:2.3.3.1]
RVBD_1131  methylcitrate synthase PrpC [KO:K01647] [EC:2.3.3.1]
RVBD_1475c  iron-regulated aconitate hydratase Can [KO:K01681] [EC:4.2.1.3]
RVBD_0066c  isocitrate dehydrogenase Icd2 [KO:K00031] [EC:1.1.1.42]
RVBD_3339c  isocitrate dehydrogenase Icd1 [KO:K00031] [EC:1.1.1.42]
RVBD_1248c  2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
RVBD_0462  dihydrolipoamide dehydrogenase LpdC [KO:K00382] [EC:1.8.1.4]
RVBD_2455c  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RVBD_2454c  oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RVBD_0952  succinyl-CoA synthetase alpha chain SucD [KO:K01902] [EC:6.2.1.5]
RVBD_0951  succinyl-CoA synthetase beta chain SucC [KO:K01903] [EC:6.2.1.5]
RVBD_0248c  succinate dehydrogenase [iron-sulfur subunit] SdhA_1 [KO:K00239] [EC:1.3.5.1]
RVBD_3318  succinate dehydrogenase [flavoprotein subunit] SdhA [KO:K00239] [EC:1.3.5.1]
RVBD_0247c  succinate dehydrogenase [iron-sulfur subunit] [KO:K00240] [EC:1.3.5.1]
RVBD_3319  succinate dehydrogenase [iron-sulfur protein subunit] SdhB [KO:K00240] [EC:1.3.5.1]
RVBD_3316  succinate dehydrogenase [cytochrome B-556 subunit] SdhC [KO:K00241]
RVBD_3317  succinate dehydrogenase [hydrophobic membrane anchor subunit] SdhD [KO:K00242]
RVBD_1552  fumarate reductase FrdA [KO:K00244] [EC:1.3.5.1]
RVBD_1553  fumarate reductase FrdB [KO:K00245] [EC:1.3.5.1]
RVBD_1554  fumarate reductase FrdC [KO:K00246]
RVBD_1555  fumarate reductase FrdD [KO:K00247]
RVBD_1098c  fumarase Fum [KO:K01679] [EC:4.2.1.2]
RVBD_1240  malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
RVBD_2852c  malate dehydrogenase Mqo [KO:K00116] [EC:1.1.5.4]
RVBD_2967c  pyruvate carboxylase Pca [KO:K01958] [EC:6.4.1.1]
RVBD_0211  iron-regulated phosphoenolpyruvate carboxykinase PckA [KO:K01596] [EC:4.1.1.32]
RVBD_2241  pyruvate dehydrogenase E1 component AceE [KO:K00163] [EC:1.2.4.1]
RVBD_2215  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase DlaT [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtv00010  Glycolysis / Gluconeogenesis
mtv00053  Ascorbate and aldarate metabolism
mtv00061  Fatty acid biosynthesis
mtv00071  Fatty acid degradation
mtv00190  Oxidative phosphorylation
mtv00220  Arginine biosynthesis
mtv00250  Alanine, aspartate and glutamate metabolism
mtv00280  Valine, leucine and isoleucine degradation
mtv00350  Tyrosine metabolism
mtv00470  D-Amino acid metabolism
mtv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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