KEGG   PATHWAY: muc00020
Entry
muc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mucilaginibacter xinganensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
muc00020  Citrate cycle (TCA cycle)
muc00020

Module
muc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:muc00020]
muc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:muc00020]
muc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:muc00020]
muc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:muc00020]
Other DBs
GO: 0006099
Organism
Mucilaginibacter xinganensis [GN:muc]
Gene
MuYL_1925  Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
MuYL_1015  aconitase [KO:K01681] [EC:4.2.1.3]
MuYL_1525  Isocitrate dehydrogenase NADP [KO:K00031] [EC:1.1.1.42]
MuYL_3397  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MuYL_4042  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MuYL_2727  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
MuYL_4041  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MuYL_0549  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
MuYL_3186  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MuYL_3825  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MuYL_2421  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
MuYL_1569  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
MuYL_1568  Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MuYL_1570  succinate dehydrogenase [KO:K00241]
MuYL_4744  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
MuYL_3137  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
MuYL_4225  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MuYL_0511  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
MuYL_0727  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
MuYL_0512  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
muc00010  Glycolysis / Gluconeogenesis
muc00053  Ascorbate and aldarate metabolism
muc00061  Fatty acid biosynthesis
muc00071  Fatty acid degradation
muc00190  Oxidative phosphorylation
muc00220  Arginine biosynthesis
muc00250  Alanine, aspartate and glutamate metabolism
muc00280  Valine, leucine and isoleucine degradation
muc00350  Tyrosine metabolism
muc00470  D-Amino acid metabolism
muc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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