KEGG   PATHWAY: mui00020
Entry
mui00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mesitornis unicolor (brown roatelo)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mui00020  Citrate cycle (TCA cycle)
mui00020

Module
mui_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mui00020]
mui_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mui00020]
Other DBs
GO: 0006099
Organism
Mesitornis unicolor (brown roatelo) [GN:mui]
Gene
104533796  [KO:K00161] [EC:1.2.4.1]
104534112  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
104534400  DLST; LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
104536406  [KO:K00164] [EC:1.2.4.2]
104536545  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
104537325  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
104539483  ACO2; LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
104540043  ACLY; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
104540232  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
104540882  [KO:K00030] [EC:1.1.1.41]
104541428  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
104541644  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
104542152  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
104542316  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
104544152  SUCLA2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104544301  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
104545219  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
104546475  MDH2; LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
104546622  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
104547042  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104548023  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
104548706  SUCLG1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mui00010  Glycolysis / Gluconeogenesis
mui00053  Ascorbate and aldarate metabolism
mui00061  Fatty acid biosynthesis
mui00062  Fatty acid elongation
mui00071  Fatty acid degradation
mui00190  Oxidative phosphorylation
mui00220  Arginine biosynthesis
mui00250  Alanine, aspartate and glutamate metabolism
mui00280  Valine, leucine and isoleucine degradation
mui00350  Tyrosine metabolism
mui00470  D-Amino acid metabolism
mui00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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