KEGG   PATHWAY: mvm00020
Entry
mvm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacter virginiensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mvm00020  Citrate cycle (TCA cycle)
mvm00020

Module
mvm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mvm00020]
mvm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mvm00020]
mvm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mvm00020]
mvm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mvm00020]
mvm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mvm00020]
Other DBs
GO: 0006099
Organism
Mycolicibacter virginiensis [GN:mvm]
Gene
MJO54_04400  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MJO54_04415  citrate synthase [KO:K01647] [EC:2.3.3.1]
MJO54_06295  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
MJO54_11725  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MJO54_12535  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
MJO54_18080  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MJO54_06875  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MJO54_02630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJO54_07990  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MJO54_07995  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MJO54_05050  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MJO54_05045  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MJO54_17805  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MJO54_01185  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MJO54_17810  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MJO54_01180  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MJO54_17795  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MJO54_17800  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MJO54_06010  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MJO54_06850  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MJO54_14695  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
MJO54_15230  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MJO54_00910  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
MJO54_09190  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
MJO54_09485  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mvm00010  Glycolysis / Gluconeogenesis
mvm00053  Ascorbate and aldarate metabolism
mvm00061  Fatty acid biosynthesis
mvm00071  Fatty acid degradation
mvm00190  Oxidative phosphorylation
mvm00220  Arginine biosynthesis
mvm00250  Alanine, aspartate and glutamate metabolism
mvm00280  Valine, leucine and isoleucine degradation
mvm00350  Tyrosine metabolism
mvm00470  D-Amino acid metabolism
mvm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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