KEGG   PATHWAY: nal00630
Entry
nal00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Nocardiopsis alba
Class
Metabolism; Carbohydrate metabolism
Pathway map
nal00630  Glyoxylate and dicarboxylate metabolism
nal00630

Module
nal_M00012  Glyoxylate cycle [PATH:nal00630]
nal_M00621  Glycine cleavage system [PATH:nal00630]
nal_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:nal00630]
Other DBs
GO: 0046487 0043648
Organism
Nocardiopsis alba [GN:nal]
Gene
B005_4023  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
B005_1828  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
B005_3305  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
B005_4639  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
B005_3584  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
B005_3677  malate dehydrogenase family protein [KO:K00024] [EC:1.1.1.37]
B005_2438  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B005_5398  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B005_1317  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
B005_3229  putative acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
B005_2871  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
B005_3356  crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
B005_3228  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
B005_1111  carbamoyl-phosphate synthase L chain, ATP binding domain protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
B005_1109  putative propionyl-CoA carboxylase beta chain 5 [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
B005_1110  acyl-CoA carboxylase epsilon subunit [KO:K27095]
B005_1592  methylmalonyl-CoA mutase N-terminal domain protein [KO:K01847] [EC:5.4.99.2]
B005_1593  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
B005_2526  methylaspartate mutase E chain family protein [KO:K19268] [EC:5.4.99.1]
B005_1646  methylaspartate mutase E chain family protein [KO:K19268] [EC:5.4.99.1]
B005_1647  B12 binding domain protein [KO:K01846] [EC:5.4.99.1]
B005_2525  B12 binding domain protein [KO:K01846] [EC:5.4.99.1]
B005_4784  FAD linked oxidase, C-terminal domain protein [KO:K00104] [EC:1.1.99.14]
B005_3583  FAD linked oxidase, C-terminal domain protein [KO:K00104] [EC:1.1.99.14]
B005_3582  FAD linked oxidase, C-terminal domain protein [KO:K11472] [EC:1.1.99.14]
B005_3581  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
B005_4033  catA; catalase [KO:K03781] [EC:1.11.1.6]
B005_0217  catalase family protein [KO:K03781] [EC:1.11.1.6]
B005_5150  catalase family protein [KO:K03781] [EC:1.11.1.6]
B005_5124  alanine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
B005_0144  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
B005_0158  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
B005_3296  aminotransferase class-V family protein [KO:K00600] [EC:2.1.2.1]
B005_4083  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
B005_3298  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
B005_1773  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B005_0129  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B005_3297  gcvH; glycine cleavage system H protein [KO:K02437]
B005_3631  thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein [KO:K01608] [EC:4.1.1.47]
B005_3628  xylose isomerase-like TIM barrel family protein [KO:K01816] [EC:5.3.1.22]
B005_3629  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
B005_2358  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
B005_5070  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
B005_2134  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
B005_0846  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B005_5144  molybdopterin dinucleotide binding domain protein [KO:K00123] [EC:1.17.1.9]
B005_5145  4Fe-4S binding domain protein [KO:K00124]
B005_3286  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
B005_4472  amdA; acetamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
nal00010  Glycolysis / Gluconeogenesis
nal00020  Citrate cycle (TCA cycle)
nal00030  Pentose phosphate pathway
nal00053  Ascorbate and aldarate metabolism
nal00071  Fatty acid degradation
nal00230  Purine metabolism
nal00250  Alanine, aspartate and glutamate metabolism
nal00260  Glycine, serine and threonine metabolism
nal00620  Pyruvate metabolism
nal00710  Carbon fixation by Calvin cycle
nal00750  Vitamin B6 metabolism
nal00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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