KEGG   PATHWAY: nann00020
Entry
nann00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Nannocystis poenicansa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nann00020  Citrate cycle (TCA cycle)
nann00020

Module
nann_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nann00020]
nann_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nann00020]
nann_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nann00020]
nann_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nann00020]
nann_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nann00020]
Other DBs
GO: 0006099
Organism
Nannocystis poenicansa [GN:nann]
Gene
O0S08_14980  citrate synthase [KO:K01647] [EC:2.3.3.1]
O0S08_33980  citrate synthase [KO:K01647] [EC:2.3.3.1]
O0S08_33985  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
O0S08_12940  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
O0S08_29485  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
O0S08_09110  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
O0S08_09105  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
O0S08_09100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O0S08_44160  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O0S08_48595  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O0S08_09070  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
O0S08_09065  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
O0S08_18985  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
O0S08_18990  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
O0S08_22795  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
O0S08_22800  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
O0S08_22790  succinate dehydrogenase cytochrome b subunit [KO:K00241]
O0S08_38465  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
O0S08_18995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
O0S08_19595  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
O0S08_24960  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
O0S08_12985  thiamine pyrophosphate-dependent enzyme [KO:K00161] [EC:1.2.4.1]
O0S08_12980  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
O0S08_12975  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
O0S08_48590  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nann00010  Glycolysis / Gluconeogenesis
nann00053  Ascorbate and aldarate metabolism
nann00061  Fatty acid biosynthesis
nann00071  Fatty acid degradation
nann00190  Oxidative phosphorylation
nann00220  Arginine biosynthesis
nann00250  Alanine, aspartate and glutamate metabolism
nann00280  Valine, leucine and isoleucine degradation
nann00350  Tyrosine metabolism
nann00470  D-Amino acid metabolism
nann00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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