KEGG   PATHWAY: nhy00020
Entry
nhy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Natronosporangium hydrolyticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nhy00020  Citrate cycle (TCA cycle)
nhy00020

Module
nhy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:nhy00020]
nhy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nhy00020]
nhy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nhy00020]
Other DBs
GO: 0006099
Organism
Natronosporangium hydrolyticum [GN:nhy]
Gene
JQS43_15575  citrate synthase [KO:K01647] [EC:2.3.3.1]
JQS43_15580  citrate synthase [KO:K01647] [EC:2.3.3.1]
JQS43_23645  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
JQS43_09450  citrate synthase [KO:K01647] [EC:2.3.3.1]
JQS43_09530  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JQS43_04580  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JQS43_05040  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
JQS43_07820  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JQS43_02170  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JQS43_02165  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JQS43_04500  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JQS43_04495  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JQS43_20280  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JQS43_20285  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JQS43_00680  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JQS43_00700  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JQS43_04540  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JQS43_00175  biotin carboxylase [KO:K01959] [EC:6.4.1.1]
JQS43_02620  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
JQS43_16995  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
JQS43_18875  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
JQS43_07815  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nhy00010  Glycolysis / Gluconeogenesis
nhy00053  Ascorbate and aldarate metabolism
nhy00061  Fatty acid biosynthesis
nhy00071  Fatty acid degradation
nhy00190  Oxidative phosphorylation
nhy00220  Arginine biosynthesis
nhy00250  Alanine, aspartate and glutamate metabolism
nhy00280  Valine, leucine and isoleucine degradation
nhy00350  Tyrosine metabolism
nhy00470  D-Amino acid metabolism
nhy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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