KEGG   PATHWAY: nmt00020
Entry
nmt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Neisseria meningitidis 8013 (serogroup C)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
nmt00020  Citrate cycle (TCA cycle)
nmt00020

Module
nmt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:nmt00020]
nmt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:nmt00020]
nmt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:nmt00020]
nmt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:nmt00020]
Other DBs
GO: 0006099
Organism
Neisseria meningitidis 8013 (serogroup C) [GN:nmt]
Gene
NMV_1441  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
NMV_0828  acnB; aconitate hydratase 2 (citrate hydro-lyase 2; aconitase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NMV_1476  icd; isocitrate dehydrogenase [NADP] (oxalosuccinate decarboxylase; IDH) [KO:K00031] [EC:1.1.1.42]
NMV_1440  sucA; 2-oxoglutarate dehydrogenase E1 component (alpha-ketoglutarate dehydrogenase) [KO:K00164] [EC:1.2.4.2]
NMV_1439  sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex) [KO:K00658] [EC:2.3.1.61]
NMV_1054  lpdA1; dihydrolipoyl dehydrogenase (pyruvate dehydrogenase E3 component; dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
NMV_1438  lpdA3; dihydrolipoyl dehydrogenase (E3 component of 2-oxoglutarate dehydrogenase complex; dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
NMV_1448  lpdA2; dihydrolipoyl dehydrogenase (E3 component of pyruvate complex; dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
NMV_1434  sucD; succinyl-CoA synthetase alpha chain (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
NMV_1435  sucC; succinyl-CoA synthetase beta chain (SCS-beta) [KO:K01903] [EC:6.2.1.5]
NMV_1444  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NMV_1443  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
NMV_1446  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
NMV_1445  sdhD; succinate dehydrogenase membrane anchor protein [KO:K00242]
NMV_0766  fumA; fumarate hydratase class I (fumarase) [KO:K01676] [EC:4.2.1.2]
NMV_0928  fumC; fumarate hydratase class II (fumarase C) [KO:K01679] [EC:4.2.1.2]
NMV_2303  mqo; malate:quinone oxidoreductase (malate dehydrogenase [acceptor]; MQO) [KO:K00116] [EC:1.1.5.4]
NMV_1056  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NMV_1055  aceF; dihydrolipoyllysine-residue acetyltransferase (pyruvate dehydrogenase E2 component; dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
nmt00010  Glycolysis / Gluconeogenesis
nmt00061  Fatty acid biosynthesis
nmt00071  Fatty acid degradation
nmt00190  Oxidative phosphorylation
nmt00220  Arginine biosynthesis
nmt00250  Alanine, aspartate and glutamate metabolism
nmt00280  Valine, leucine and isoleucine degradation
nmt00350  Tyrosine metabolism
nmt00470  D-Amino acid metabolism
nmt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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