KEGG   PATHWAY: noi00020
Entry
noi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Nocardioides jishulii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
noi00020  Citrate cycle (TCA cycle)
noi00020

Module
noi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:noi00020]
noi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:noi00020]
noi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:noi00020]
noi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:noi00020]
noi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:noi00020]
Other DBs
GO: 0006099
Organism
Nocardioides jishulii [GN:noi]
Gene
FCL41_13245  citrate synthase [KO:K01647] [EC:2.3.3.1]
FCL41_14495  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
FCL41_06815  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FCL41_12905  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FCL41_11450  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FCL41_12565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCL41_14780  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FCL41_14785  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FCL41_12960  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FCL41_12965  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FCL41_15780  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
FCL41_12860  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FCL41_12865  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCL41_12855  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FCL41_03430  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FCL41_03395  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FCL41_12925  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCL41_10450  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FCL41_15350  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FCL41_16005  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FCL41_10185  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
FCL41_10725  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FCL41_09850  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
noi00010  Glycolysis / Gluconeogenesis
noi00053  Ascorbate and aldarate metabolism
noi00061  Fatty acid biosynthesis
noi00071  Fatty acid degradation
noi00190  Oxidative phosphorylation
noi00220  Arginine biosynthesis
noi00250  Alanine, aspartate and glutamate metabolism
noi00280  Valine, leucine and isoleucine degradation
noi00350  Tyrosine metabolism
noi00470  D-Amino acid metabolism
noi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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