KEGG   PATHWAY: ntx00260
Entry
ntx00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Niallia taxi
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
ntx00260  Glycine, serine and threonine metabolism
ntx00260

Module
ntx_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:ntx00260]
ntx_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:ntx00260]
ntx_M00621  Glycine cleavage system [PATH:ntx00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Niallia taxi [GN:ntx]
Gene
NQZ71_07225  aspartate kinase [KO:K00928] [EC:2.7.2.4]
NQZ71_14615  dapG; aspartate kinase [KO:K00928] [EC:2.7.2.4]
NQZ71_19140  aspartate kinase [KO:K00928] [EC:2.7.2.4]
NQZ71_14620  asd; aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
NQZ71_03640  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
NQZ71_05980  homoserine dehydrogenase [KO:K00003] [EC:1.1.1.3]
NQZ71_05990  thrB; homoserine kinase [KO:K00872] [EC:2.7.1.39]
NQZ71_05985  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
NQZ71_14235  threonine synthase [KO:K01733] [EC:4.2.3.1]
NQZ71_25785  thrC; threonine synthase [KO:K01733] [EC:4.2.3.1]
NQZ71_16655  low specificity L-threonine aldolase [KO:K01620] [EC:4.1.2.48]
NQZ71_03450  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
NQZ71_22035  glycerate kinase [KO:K00865] [EC:2.7.1.165]
NQZ71_05230  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
NQZ71_16640  phosphoglycerate dehydrogenase [KO:K00058] [EC:1.1.1.95 1.1.1.399]
NQZ71_17845  serC; 3-phosphoserine/phosphohydroxythreonine transaminase [KO:K00831] [EC:2.6.1.52]
NQZ71_11070  HAD family hydrolase [KO:K25528] [EC:3.1.3.3]
NQZ71_10590  primary-amine oxidase [KO:K00276] [EC:1.4.3.21]
NQZ71_08560  gcvPA; aminomethyl-transferring glycine dehydrogenase subunit GcvPA [KO:K00282] [EC:1.4.4.2]
NQZ71_08565  gcvPB; aminomethyl-transferring glycine dehydrogenase subunit GcvPB [KO:K00283] [EC:1.4.4.2]
NQZ71_08555  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
NQZ71_08795  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQZ71_11450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQZ71_15580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NQZ71_05790  gcvH; glycine cleavage system protein GcvH [KO:K02437]
NQZ71_08015  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
NQZ71_23250  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
NQZ71_23390  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
NQZ71_11790  solA; N-methyl-L-tryptophan oxidase [KO:K00301] [EC:1.5.3.1]
NQZ71_07960  bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase [KO:K17217] [EC:4.4.1.1 4.4.1.2]
NQZ71_15095  sdaAA; L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha [KO:K01752] [EC:4.3.1.17]
NQZ71_15100  sdaAB; L-serine ammonia-lyase, iron-sulfur-dependent subunit beta [KO:K01752] [EC:4.3.1.17]
NQZ71_09770  ilvA; threonine ammonia-lyase IlvA [KO:K01754] [EC:4.3.1.19]
NQZ71_10895  amino acid racemase [KO:K25316] [EC:5.1.1.10]
NQZ71_00020  aspartate/glutamate racemase family protein [KO:K25316] [EC:5.1.1.10]
NQZ71_10760  trpA; tryptophan synthase subunit alpha [KO:K01695] [EC:4.2.1.20]
NQZ71_10755  trpB; tryptophan synthase subunit beta [KO:K01696] [EC:4.2.1.20]
NQZ71_24225  pyridoxal-dependent decarboxylase [KO:K13745] [EC:4.1.1.86]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
ntx00010  Glycolysis / Gluconeogenesis
ntx00020  Citrate cycle (TCA cycle)
ntx00230  Purine metabolism
ntx00250  Alanine, aspartate and glutamate metabolism
ntx00270  Cysteine and methionine metabolism
ntx00290  Valine, leucine and isoleucine biosynthesis
ntx00300  Lysine biosynthesis
ntx00330  Arginine and proline metabolism
ntx00460  Cyanoamino acid metabolism
ntx00470  D-Amino acid metabolism
ntx00564  Glycerophospholipid metabolism
ntx00600  Sphingolipid metabolism
ntx00620  Pyruvate metabolism
ntx00630  Glyoxylate and dicarboxylate metabolism
ntx00640  Propanoate metabolism
ntx00680  Methane metabolism
ntx00860  Porphyrin metabolism
ntx00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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