KEGG   PATHWAY: oli00030
Entry
oli00030                    Pathway                                
Name
Pentose phosphate pathway - Olivibacter sp. LS-1
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
oli00030  Pentose phosphate pathway
oli00030

Module
oli_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:oli00030]
oli_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:oli00030]
oli_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:oli00030]
oli_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:oli00030]
oli_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:oli00030]
Other DBs
GO: 0006098
Organism
Olivibacter sp. LS-1 [GN:oli]
Gene
FKG96_00270  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FKG96_18855  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FKG96_18860  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
FKG96_05005  lactonase family protein [KO:K07404] [EC:3.1.1.31]
FKG96_18850  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FKG96_13245  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
FKG96_07990  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
FKG96_16750  transketolase [KO:K00615] [EC:2.2.1.1]
FKG96_16755  transketolase family protein [KO:K00615] [EC:2.2.1.1]
FKG96_10445  transketolase [KO:K00615] [EC:2.2.1.1]
FKG96_10450  transketolase family protein [KO:K00615] [EC:2.2.1.1]
FKG96_07995  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
FKG96_13720  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
FKG96_18845  RpiB/LacA/LacB family sugar-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
FKG96_24030  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
FKG96_19185  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
FKG96_06960  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
FKG96_23345  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
FKG96_26405  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FKG96_20835  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FKG96_15615  NADP-dependent glyceraldehyde-3-phosphate dehydrogenase [KO:K00131] [EC:1.2.1.9]
FKG96_13690  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
FKG96_11250  PQQ-binding-like beta-propeller repeat protein [KO:K00117] [EC:1.1.5.2]
FKG96_03210  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
FKG96_17325  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
FKG96_20680  gluconate kinase [KO:K25031] [EC:2.7.1.12]
FKG96_26400  sugar kinase [KO:K00874] [EC:2.7.1.45]
FKG96_12225  selenocysteine synthase [KO:K17468] [EC:4.3.1.29]
FKG96_17115  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
FKG96_13525  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
FKG96_02260  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
FKG96_16650  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
FKG96_18165  1-phosphofructokinase family hexose kinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
oli00010  Glycolysis / Gluconeogenesis
oli00040  Pentose and glucuronate interconversions
oli00052  Galactose metabolism
oli00230  Purine metabolism
oli00240  Pyrimidine metabolism
oli00340  Histidine metabolism
oli00630  Glyoxylate and dicarboxylate metabolism
oli00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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