KEGG   PATHWAY: opi03030
Entry
opi03030                    Pathway                                
Name
DNA replication - Ochotona princeps (American pika)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
opi03030  DNA replication
opi03030

Organism
Ochotona princeps (American pika) [GN:opi]
Gene
101516438  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
101516701  POLD1; DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
101517199  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
101518289  RPA3; replication protein A 14 kDa subunit [KO:K10740]
101519123  [KO:K03111]
101519462  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
101520231  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
101520493  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
101520591  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
101521943  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
101522348  RFC5; replication factor C subunit 5 [KO:K10756]
101523525  RFC2; replication factor C subunit 2 [KO:K10755]
101523960  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
101524368  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
101524642  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
101524740  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
101524932  RFC1; replication factor C subunit 1 [KO:K10754]
101525219  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
101525356  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
101525813  PRIM2; DNA primase large subunit [KO:K02685]
101525840  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
101526039  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
101526269  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
101526626  [KO:K04802]
101528332  RFC4; replication factor C subunit 4 [KO:K10755]
101528587  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
101529534  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
101530098  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
101530740  RFC3; replication factor C subunit 3 [KO:K10756]
101531600  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
101531988  RPA2; replication protein A 32 kDa subunit isoform X2 [KO:K10739]
101532900  POLA2; DNA polymerase alpha subunit B [KO:K02321]
101534639  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
101535758  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
101536480  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
101536651  [KO:K04802]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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