KEGG   PATHWAY: pag00020
Entry
pag00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa LESB58
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pag00020  Citrate cycle (TCA cycle)
pag00020

Module
pag_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pag00020]
pag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pag00020]
pag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pag00020]
pag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pag00020]
pag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pag00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa LESB58 [GN:pag]
Gene
PLES_37471  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PLES_37671  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
PLES_35421  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PLES_24811  idh; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PLES_24821  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PLES_37421  sucA; 2-oxoglutarate dehydrogenase (E1 subunit) [KO:K00164] [EC:1.2.4.2]
PLES_37411  sucB; dihydrolipoamide succinyltransferase (E2 subunit) [KO:K00658] [EC:2.3.1.61]
PLES_30541  lpdV; lipoamide dehydrogenase-Val [KO:K00382] [EC:1.8.1.4]
PLES_37401  lpdG; lipoamide dehydrogenase-glc [KO:K00382] [EC:1.8.1.4]
PLES_26171  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PLES_52141  lpd3; dihydrolipoamide dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
PLES_37381  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
PLES_37391  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
PLES_58401  probable coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
PLES_37441  sdhA; succinate dehydrogenase (A subunit) [KO:K00239] [EC:1.3.5.1]
PLES_37431  sdhB; succinate dehydrogenase (B subunit) [KO:K00240] [EC:1.3.5.1]
PLES_37461  sdhC; succinate dehydrogenase (C subunit) [KO:K00241]
PLES_37451  sdhD; succinate dehydrogenase (D subunit) [KO:K00242]
PLES_47111  probable fumarase [KO:K01676] [EC:4.2.1.2]
PLES_44641  fumC2; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PLES_48491  fumC1; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PLES_16081  mqoA; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PLES_50261  mqoB; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PLES_58311  probable biotin carboxylase subunit of a transcarboxylase [KO:K01959] [EC:6.4.1.1]
PLES_58301  probable transcarboxylase subunit [KO:K01960] [EC:6.4.1.1]
PLES_55861  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PLES_54041  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
PLES_54051  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
PLES_07751  probable hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pag00010  Glycolysis / Gluconeogenesis
pag00053  Ascorbate and aldarate metabolism
pag00061  Fatty acid biosynthesis
pag00071  Fatty acid degradation
pag00190  Oxidative phosphorylation
pag00220  Arginine biosynthesis
pag00250  Alanine, aspartate and glutamate metabolism
pag00280  Valine, leucine and isoleucine degradation
pag00350  Tyrosine metabolism
pag00470  D-Amino acid metabolism
pag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system