KEGG   PATHWAY: aalg00020
Entry
aalg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Arenibacter algicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aalg00020  Citrate cycle (TCA cycle)
aalg00020

Module
aalg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aalg00020]
aalg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aalg00020]
aalg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aalg00020]
aalg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aalg00020]
aalg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aalg00020]
Other DBs
GO: 0006099
Organism
Arenibacter algicola [GN:aalg]
Gene
AREALGSMS7_00290  gltA2; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
AREALGSMS7_04938  acn; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
AREALGSMS7_03064  citB; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
AREALGSMS7_04686  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AREALGSMS7_02208  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AREALGSMS7_02209  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AREALGSMS7_04958  odhB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AREALGSMS7_04146  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AREALGSMS7_02817  lpdC; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AREALGSMS7_04273  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AREALGSMS7_03333  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AREALGSMS7_01476  frdA; fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AREALGSMS7_01474  frdB; fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AREALGSMS7_01477  succinate dehydrogenase/fumarate reductase transmembrane subunit [KO:K00241]
AREALGSMS7_03916  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AREALGSMS7_02646  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AREALGSMS7_00045  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
AREALGSMS7_00831  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AREALGSMS7_00420  acoA; acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
AREALGSMS7_00376  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AREALGSMS7_00419  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aalg00010  Glycolysis / Gluconeogenesis
aalg00053  Ascorbate and aldarate metabolism
aalg00061  Fatty acid biosynthesis
aalg00071  Fatty acid degradation
aalg00190  Oxidative phosphorylation
aalg00220  Arginine biosynthesis
aalg00250  Alanine, aspartate and glutamate metabolism
aalg00280  Valine, leucine and isoleucine degradation
aalg00350  Tyrosine metabolism
aalg00470  D-Amino acid metabolism
aalg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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