KEGG   PATHWAY: aamy00020
Entry
aamy00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Anoxybacillus amylolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aamy00020  Citrate cycle (TCA cycle)
aamy00020

Module
aamy_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aamy00020]
aamy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aamy00020]
aamy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aamy00020]
aamy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aamy00020]
aamy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aamy00020]
Other DBs
GO: 0006099
Organism
Anoxybacillus amylolyticus [GN:aamy]
Gene
GFC30_3048  citZ; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
GFC30_1638  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GFC30_3047  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
GFC30_1950  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
GFC30_1951  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GFC30_2568  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC30_1777  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC30_1357  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GFC30_1597  acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GFC30_1598  acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GFC30_1502  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
GFC30_1501  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
GFC30_2938  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GFC30_2937  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
GFC30_2939  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
GFC30_846  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
GFC30_3046  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
GFC30_2258  mqo; malate dehydrogenase [KO:K00116] [EC:1.1.5.4]
GFC30_1378  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GFC30_3144  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GFC30_1704  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
GFC30_1354  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
GFC30_1355  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GFC30_1705  hypothetical protein [KO:K00162] [EC:1.2.4.1]
GFC30_1703  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
GFC30_1356  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aamy00010  Glycolysis / Gluconeogenesis
aamy00053  Ascorbate and aldarate metabolism
aamy00061  Fatty acid biosynthesis
aamy00071  Fatty acid degradation
aamy00190  Oxidative phosphorylation
aamy00220  Arginine biosynthesis
aamy00250  Alanine, aspartate and glutamate metabolism
aamy00280  Valine, leucine and isoleucine degradation
aamy00350  Tyrosine metabolism
aamy00470  D-Amino acid metabolism
aamy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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