KEGG   PATHWAY: abas00020
Entry
abas00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acidisarcina polymorpha
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abas00020  Citrate cycle (TCA cycle)
abas00020

Module
abas_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abas00020]
abas_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abas00020]
abas_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abas00020]
abas_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abas00020]
abas_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abas00020]
Other DBs
GO: 0006099
Organism
Acidisarcina polymorpha [GN:abas]
Gene
ACPOL_1815  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
ACPOL_2395  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ACPOL_6022  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ACPOL_1167  Isocitrate dehydrogenase [NAD] [KO:K00030] [EC:1.1.1.41]
ACPOL_4113  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ACPOL_4296  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACPOL_6663  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ACPOL_6661  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ACPOL_3609  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
ACPOL_3610  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
ACPOL_6015  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACPOL_6016  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ACPOL_6014  Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
ACPOL_1787  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
ACPOL_1858  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ACPOL_0381  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ACPOL_0730  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ACPOL_6021  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACPOL_0714  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACPOL_5166  Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
ACPOL_1795  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ACPOL_4299  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ACPOL_5879  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abas00010  Glycolysis / Gluconeogenesis
abas00053  Ascorbate and aldarate metabolism
abas00061  Fatty acid biosynthesis
abas00071  Fatty acid degradation
abas00190  Oxidative phosphorylation
abas00220  Arginine biosynthesis
abas00250  Alanine, aspartate and glutamate metabolism
abas00280  Valine, leucine and isoleucine degradation
abas00350  Tyrosine metabolism
abas00470  D-Amino acid metabolism
abas00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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