KEGG   PATHWAY: abat03030
Entry
abat03030                   Pathway                                
Name
DNA replication - Brevefilum fermentans
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
abat03030  DNA replication
abat03030

Organism
Brevefilum fermentans [GN:abat]
Gene
CFX1CAM_0263  conserved protein of unknown function [KO:K02342] [EC:2.7.7.7]
CFX1CAM_0009  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CFX1CAM_1190  putative DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CFX1CAM_1543  dnaX; DNA polymerase III gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
CFX1CAM_0168  holB; putative DNA polymerase III delta' subunit [KO:K02341] [EC:2.7.7.7]
CFX1CAM_0183  holA; DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
CFX1CAM_0153  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CFX1CAM_1890  dnaC; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
CFX1CAM_2246  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
CFX1CAM_2207  Single-stranded DNA-binding protein [KO:K03111]
CFX1CAM_1900  rnhA; ribonuclease HI, degrades RNA of DNA-RNA hybrids [KO:K03469] [EC:3.1.26.4]
CFX1CAM_2210  rnhB; Ribonuclease HII [KO:K03470] [EC:3.1.26.4]
CFX1CAM_2271  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
CFX1CAM_0839  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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