KEGG   PATHWAY: abaw00020
Entry
abaw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Georhizobium profundi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
abaw00020  Citrate cycle (TCA cycle)
abaw00020

Module
abaw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:abaw00020]
abaw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:abaw00020]
abaw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:abaw00020]
abaw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:abaw00020]
abaw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:abaw00020]
Other DBs
GO: 0006099
Organism
Georhizobium profundi [GN:abaw]
Gene
D5400_13520  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
D5400_20300  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
D5400_03095  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
D5400_11120  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D5400_04200  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
D5400_03290  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D5400_03295  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D5400_13285  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D5400_03300  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D5400_03370  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D5400_03285  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D5400_03280  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D5400_03240  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D5400_03245  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D5400_03230  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
D5400_03235  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
D5400_12405  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
D5400_19005  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D5400_03275  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D5400_04710  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
D5400_02490  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
D5400_13305  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D5400_13300  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
D5400_13295  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
abaw00010  Glycolysis / Gluconeogenesis
abaw00053  Ascorbate and aldarate metabolism
abaw00061  Fatty acid biosynthesis
abaw00071  Fatty acid degradation
abaw00190  Oxidative phosphorylation
abaw00220  Arginine biosynthesis
abaw00250  Alanine, aspartate and glutamate metabolism
abaw00280  Valine, leucine and isoleucine degradation
abaw00350  Tyrosine metabolism
abaw00470  D-Amino acid metabolism
abaw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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