KEGG   PATHWAY: acai00020
Entry
acai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Anoxybacillus caldiproteolyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acai00020  Citrate cycle (TCA cycle)
acai00020

Module
acai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acai00020]
acai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acai00020]
acai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acai00020]
acai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acai00020]
acai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acai00020]
Other DBs
GO: 0006099
Organism
Anoxybacillus caldiproteolyticus [GN:acai]
Gene
ISX45_11965  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
ISX45_04130  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ISX45_11960  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ISX45_06475  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ISX45_06470  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
ISX45_02565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ISX45_08195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ISX45_09895  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ISX45_03775  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ISX45_03780  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ISX45_03305  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ISX45_03300  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ISX45_11610  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ISX45_11605  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ISX45_11615  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
ISX45_18160  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ISX45_11955  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ISX45_02675  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ISX45_12485  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ISX45_02550  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ISX45_02555  pdhB; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
ISX45_02560  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
ISX45_04805  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acai00010  Glycolysis / Gluconeogenesis
acai00053  Ascorbate and aldarate metabolism
acai00061  Fatty acid biosynthesis
acai00071  Fatty acid degradation
acai00190  Oxidative phosphorylation
acai00220  Arginine biosynthesis
acai00250  Alanine, aspartate and glutamate metabolism
acai00280  Valine, leucine and isoleucine degradation
acai00350  Tyrosine metabolism
acai00470  D-Amino acid metabolism
acai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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