KEGG   PATHWAY: acer00020
Entry
acer00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Apis cerana (Asiatic honeybee)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acer00020  Citrate cycle (TCA cycle)
acer00020

Module
acer_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acer00020]
acer_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acer00020]
acer_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acer00020]
acer_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acer00020]
acer_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acer00020]
Other DBs
GO: 0006099
Organism
Apis cerana (Asiatic honeybee) [GN:acer]
Gene
107994673  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
107998391  probable citrate synthase 2, mitochondrial isoform X2 [KO:K01647] [EC:2.3.3.1]
108000656  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
108003113  probable aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
108000745  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
107996004  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
108001696  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
107993975  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
108004249  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
108003022  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108003533  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
108003960  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
107994798  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
108000330  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107995226  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107996066  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107993356  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107993329  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108001879  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
108000164  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
107998211  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
108001092  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
108000961  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
107999749  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
107999533  fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
107996105  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
107997034  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107993444  probable malate dehydrogenase, mitochondrial isoform X2 [KO:K00026] [EC:1.1.1.37]
107994286  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108002621  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108004016  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
107997339  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
107998084  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X2 [KO:K00161] [EC:1.2.4.1]
107993289  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
107993639  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107992477  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107995101  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
108003256  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acer00010  Glycolysis / Gluconeogenesis
acer00053  Ascorbate and aldarate metabolism
acer00061  Fatty acid biosynthesis
acer00062  Fatty acid elongation
acer00071  Fatty acid degradation
acer00190  Oxidative phosphorylation
acer00220  Arginine biosynthesis
acer00250  Alanine, aspartate and glutamate metabolism
acer00280  Valine, leucine and isoleucine degradation
acer00350  Tyrosine metabolism
acer00470  D-Amino acid metabolism
acer00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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