KEGG   PATHWAY: acij00020
Entry
acij00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acidipropionibacterium virtanenii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acij00020  Citrate cycle (TCA cycle)
acij00020

Module
acij_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acij00020]
acij_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acij00020]
acij_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acij00020]
acij_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acij00020]
Other DBs
GO: 0006099
Organism
Acidipropionibacterium virtanenii [GN:acij]
Gene
JS278_01376  gltA2_2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
JS278_00190  gltA2_1; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
JS278_01766  acnA; Aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
JS278_01052  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
JS278_01504  kgd; Multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
JS278_01724  lpdC; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JS278_00903  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JS278_00902  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JS278_01037  sucD_1; Succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
JS278_01036  sucC; Succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
JS278_02627  Succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
JS278_01349  frdA_1; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JS278_01878  frdA_2; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JS278_01350  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JS278_01877  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JS278_01348  hypothetical protein [KO:K00241]
JS278_01879  hypothetical protein [KO:K00241]
JS278_00172  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
JS278_01050  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JS278_00038  accA1; Acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01958] [EC:6.4.1.1]
JS278_01832  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
JS278_02106  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
JS278_02795  nifJ; Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acij00010  Glycolysis / Gluconeogenesis
acij00053  Ascorbate and aldarate metabolism
acij00061  Fatty acid biosynthesis
acij00071  Fatty acid degradation
acij00190  Oxidative phosphorylation
acij00220  Arginine biosynthesis
acij00250  Alanine, aspartate and glutamate metabolism
acij00280  Valine, leucine and isoleucine degradation
acij00350  Tyrosine metabolism
acij00470  D-Amino acid metabolism
acij00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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