KEGG   PATHWAY: acim00020
Entry
acim00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acidocella sp. MX-AZ03
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acim00020  Citrate cycle (TCA cycle)
acim00020

Module
acim_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acim00020]
acim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acim00020]
acim_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acim00020]
acim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acim00020]
Other DBs
GO: 0006099
Organism
Acidocella sp. MX-AZ03 [GN:acim]
Gene
GT370_06995  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
GT370_06695  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GT370_02870  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GT370_17365  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GT370_17370  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GT370_02695  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GT370_17360  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GT370_17355  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GT370_08565  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
GT370_03680  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GT370_03665  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GT370_03670  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GT370_04980  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GT370_17395  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GT370_14580  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GT370_08185  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GT370_08190  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GT370_08195  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acim00010  Glycolysis / Gluconeogenesis
acim00053  Ascorbate and aldarate metabolism
acim00061  Fatty acid biosynthesis
acim00071  Fatty acid degradation
acim00190  Oxidative phosphorylation
acim00220  Arginine biosynthesis
acim00250  Alanine, aspartate and glutamate metabolism
acim00280  Valine, leucine and isoleucine degradation
acim00350  Tyrosine metabolism
acim00470  D-Amino acid metabolism
acim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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