KEGG   PATHWAY: acir00030
Entry
acir00030                   Pathway                                
Name
Pentose phosphate pathway - Actinomadura citrea
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acir00030  Pentose phosphate pathway
acir00030

Module
acir_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:acir00030]
acir_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:acir00030]
acir_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:acir00030]
acir_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:acir00030]
acir_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:acir00030]
Other DBs
GO: 0006098
Organism
Actinomadura citrea [GN:acir]
Gene
OG979_37165  hypothetical protein [KO:K01810] [EC:5.3.1.9]
OG979_37170  phosphoheptose isomerase [KO:K01810] [EC:5.3.1.9]
OG979_37175  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
OG979_39865  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
OG979_37160  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
OG979_21020  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
OG979_37150  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
OG979_03130  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
OG979_18355  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
OG979_04245  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
OG979_37185  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
OG979_26770  hypothetical protein [KO:K00615] [EC:2.2.1.1]
OG979_26775  transketolase [KO:K00615] [EC:2.2.1.1]
OG979_37180  tal; transaldolase [KO:K00616] [EC:2.2.1.2]
OG979_28235  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
OG979_11270  phosphoketolase family protein [KO:K01621] [EC:4.1.2.9 4.1.2.22]
OG979_01200  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
OG979_12265  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
OG979_33355  ribokinase [KO:K00852] [EC:2.7.1.15]
OG979_01215  ribokinase [KO:K00852] [EC:2.7.1.15]
OG979_34425  carbohydrate kinase family protein [KO:K26208] [EC:2.7.1.239]
OG979_11095  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
OG979_20510  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
OG979_31015  edd; phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
OG979_31025  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
OG979_27620  SDR family oxidoreductase [KO:K00034] [EC:1.1.1.47]
OG979_18840  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
OG979_25600  gluconokinase, GntK/IdnK-type [KO:K00851] [EC:2.7.1.12]
OG979_08235  sugar kinase [KO:K00874] [EC:2.7.1.45]
OG979_17395  sugar kinase [KO:K00874] [EC:2.7.1.45]
OG979_34215  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
OG979_16795  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
OG979_10635  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
OG979_04525  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
acir00010  Glycolysis / Gluconeogenesis
acir00040  Pentose and glucuronate interconversions
acir00052  Galactose metabolism
acir00230  Purine metabolism
acir00240  Pyrimidine metabolism
acir00340  Histidine metabolism
acir00630  Glyoxylate and dicarboxylate metabolism
acir00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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