KEGG   PATHWAY: aclo00020
Entry
aclo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Arcobacter cloacae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aclo00020  Citrate cycle (TCA cycle)
aclo00020

Module
aclo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aclo00020]
aclo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aclo00020]
aclo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aclo00020]
Other DBs
GO: 0006099
Organism
Arcobacter cloacae [GN:aclo]
Gene
ACLO_0437  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ACLO_0411  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ACLO_1627  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ACLO_1440  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
ACLO_0956  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ACLO_0955  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ACLO_0954  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
ACLO_0957  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
ACLO_0427  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
ACLO_0426  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
ACLO_0428  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
ACLO_2183  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
ACLO_a0121  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ACLO_1441  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
ACLO_0648  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
ACLO_0746  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
ACLO_0290  oadA1; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
ACLO_1341  oadA2; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
ACLO_1339  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ACLO_0157  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
ACLO_0156  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
ACLO_0159  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
ACLO_0158  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aclo00010  Glycolysis / Gluconeogenesis
aclo00061  Fatty acid biosynthesis
aclo00071  Fatty acid degradation
aclo00190  Oxidative phosphorylation
aclo00220  Arginine biosynthesis
aclo00250  Alanine, aspartate and glutamate metabolism
aclo00280  Valine, leucine and isoleucine degradation
aclo00350  Tyrosine metabolism
aclo00470  D-Amino acid metabolism
aclo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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