KEGG   PATHWAY: acn00020
Entry
acn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Anaplasma centrale
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acn00020  Citrate cycle (TCA cycle)
acn00020

Module
acn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acn00020]
acn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acn00020]
acn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acn00020]
acn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acn00020]
Other DBs
GO: 0006099
Organism
Anaplasma centrale [GN:acn]
Gene
ACIS_00209  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ACIS_00321  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
ACIS_00241  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ACIS_00895  sucA; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
ACIS_00275  putative dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
ACIS_00543  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACIS_01074  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ACIS_01062  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
ACIS_01060  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
ACIS_01108  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ACIS_01107  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ACIS_01005  sdhC; succinate dehydrogenase cytochrome B-556 subunit [KO:K00241]
ACIS_01004  sdhD; putative succinate dehydrogenase SdhD [KO:K00242]
ACIS_00402  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ACIS_00745  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ACIS_01167  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
ACIS_01197  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
ACIS_00204  pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acn00010  Glycolysis / Gluconeogenesis
acn00061  Fatty acid biosynthesis
acn00190  Oxidative phosphorylation
acn00220  Arginine biosynthesis
acn00250  Alanine, aspartate and glutamate metabolism
acn00280  Valine, leucine and isoleucine degradation
acn00470  D-Amino acid metabolism
acn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system