KEGG   PATHWAY: acop00020
Entry
acop00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aeribacillus composti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acop00020  Citrate cycle (TCA cycle)
acop00020

Module
acop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acop00020]
acop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acop00020]
acop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acop00020]
acop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acop00020]
acop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acop00020]
Other DBs
GO: 0006099
Organism
Aeribacillus composti [GN:acop]
Gene
RI196_13855  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
RI196_08745  mmgD; citrate synthase [KO:K01647] [EC:2.3.3.1]
RI196_09545  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
RI196_13850  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RI196_08385  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RI196_08390  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
RI196_12355  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RI196_02560  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RI196_08050  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RI196_10370  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RI196_10365  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RI196_10805  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RI196_10810  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RI196_03635  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
RI196_13630  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RI196_13625  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RI196_13635  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
RI196_15830  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
RI196_04170  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RI196_13845  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RI196_08715  hypothetical protein [KO:K00024] [EC:1.1.1.37]
RI196_16520  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
RI196_08140  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
RI196_04845  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RI196_08035  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
RI196_08040  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
RI196_14815  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
RI196_18010  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
RI196_02435  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
RI196_02555  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
RI196_08045  dihydrolipoamide acetyltransferase family protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acop00010  Glycolysis / Gluconeogenesis
acop00053  Ascorbate and aldarate metabolism
acop00061  Fatty acid biosynthesis
acop00071  Fatty acid degradation
acop00190  Oxidative phosphorylation
acop00220  Arginine biosynthesis
acop00250  Alanine, aspartate and glutamate metabolism
acop00280  Valine, leucine and isoleucine degradation
acop00350  Tyrosine metabolism
acop00470  D-Amino acid metabolism
acop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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