KEGG   PATHWAY: actr00020
Entry
actr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Actinoplanes sp. NBRC 14428
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
actr00020  Citrate cycle (TCA cycle)
actr00020

Module
actr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:actr00020]
actr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:actr00020]
actr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:actr00020]
actr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:actr00020]
actr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:actr00020]
Other DBs
GO: 0006099
Organism
Actinoplanes sp. NBRC 14428 [GN:actr]
Gene
Asp14428_78430  gltA_2; citrate synthase [KO:K01647] [EC:2.3.3.1]
Asp14428_20720  hypothetical protein [KO:K01647] [EC:2.3.3.1]
Asp14428_20740  citrate synthase [KO:K01647] [EC:2.3.3.1]
Asp14428_39690  gltA_1; citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
Asp14428_42320  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
Asp14428_23620  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Asp14428_37230  icd1; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Asp14428_58520  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Asp14428_26730  pdhD_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Asp14428_53530  oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Asp14428_53520  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Asp14428_37320  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Asp14428_37330  sucC1; succinate--CoA ligase [ADP-forming] subunit beta 1 [KO:K01903] [EC:6.2.1.5]
Asp14428_25680  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Asp14428_56100  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Asp14428_25690  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Asp14428_56090  hypothetical protein [KO:K00240] [EC:1.3.5.1]
Asp14428_25670  sdhC; succinate dehydrogenase [KO:K00241]
Asp14428_51770  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
Asp14428_51810  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Asp14428_37260  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Asp14428_55210  hypothetical protein [KO:K01596] [EC:4.1.1.32]
Asp14428_27640  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Asp14428_26740  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Asp14428_08450  nifJ-1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
actr00010  Glycolysis / Gluconeogenesis
actr00053  Ascorbate and aldarate metabolism
actr00061  Fatty acid biosynthesis
actr00071  Fatty acid degradation
actr00190  Oxidative phosphorylation
actr00220  Arginine biosynthesis
actr00250  Alanine, aspartate and glutamate metabolism
actr00280  Valine, leucine and isoleucine degradation
actr00350  Tyrosine metabolism
actr00470  D-Amino acid metabolism
actr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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