KEGG   PATHWAY: acuc00020
Entry
acuc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Agrobacterium cucumeris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
acuc00020  Citrate cycle (TCA cycle)
acuc00020

Module
acuc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:acuc00020]
acuc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:acuc00020]
acuc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:acuc00020]
acuc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:acuc00020]
acuc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:acuc00020]
Other DBs
GO: 0006099
Organism
Agrobacterium cucumeris [GN:acuc]
Gene
KZ699_05515  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KZ699_12040  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KZ699_20235  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KZ699_14585  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KZ699_07920  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KZ699_11785  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KZ699_11780  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KZ699_05580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZ699_11765  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZ699_11790  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KZ699_11795  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KZ699_00350  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KZ699_11825  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KZ699_11815  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KZ699_11835  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KZ699_11830  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KZ699_06515  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KZ699_11800  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KZ699_02665  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KZ699_12240  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KZ699_25055  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KZ699_12940  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
KZ699_05555  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KZ699_05560  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KZ699_05570  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
acuc00010  Glycolysis / Gluconeogenesis
acuc00053  Ascorbate and aldarate metabolism
acuc00061  Fatty acid biosynthesis
acuc00071  Fatty acid degradation
acuc00190  Oxidative phosphorylation
acuc00220  Arginine biosynthesis
acuc00250  Alanine, aspartate and glutamate metabolism
acuc00280  Valine, leucine and isoleucine degradation
acuc00350  Tyrosine metabolism
acuc00470  D-Amino acid metabolism
acuc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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