KEGG   PATHWAY: adf00020
Entry
adf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acropora digitifera (stony coral)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
adf00020  Citrate cycle (TCA cycle)
adf00020

Module
adf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:adf00020]
adf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:adf00020]
adf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:adf00020]
adf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:adf00020]
adf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:adf00020]
Other DBs
GO: 0006099
Organism
Acropora digitifera (stony coral) [GN:adf]
Gene
107335964  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
107347837  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
107353141  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
107339851  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
107329495  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
107351780  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
107342799  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
107347830  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107351813  isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
107345159  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
107328249  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107355973  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
107349215  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107346099  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
107333038  succinyl-CoA ligase subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107357955  succinyl-CoA ligase subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107350260  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107340263  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107328402  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107348916  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
107331467  succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
107333862  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
107335287  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
107335288  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial-like [KO:K00237]
107337645  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107337641  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
107341339  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
107338112  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
107357746  phosphoenolpyruvate carboxykinase [GTP], mitochondrial-like [KO:K01596] [EC:4.1.1.32]
107330258  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107350497  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
107355899  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
107341758  uncharacterized LOC107341758 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
adf00010  Glycolysis / Gluconeogenesis
adf00053  Ascorbate and aldarate metabolism
adf00061  Fatty acid biosynthesis
adf00062  Fatty acid elongation
adf00071  Fatty acid degradation
adf00190  Oxidative phosphorylation
adf00220  Arginine biosynthesis
adf00250  Alanine, aspartate and glutamate metabolism
adf00280  Valine, leucine and isoleucine degradation
adf00350  Tyrosine metabolism
adf00470  D-Amino acid metabolism
adf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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