KEGG   PATHWAY: adr00020
Entry
adr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Apis dorsata (giant honeybee)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
adr00020  Citrate cycle (TCA cycle)
adr00020

Module
adr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:adr00020]
adr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:adr00020]
adr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:adr00020]
adr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:adr00020]
adr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:adr00020]
Other DBs
GO: 0006099
Organism
Apis dorsata (giant honeybee) [GN:adr]
Gene
102673317  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
102674782  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
102681904  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
102671693  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
102672406  probable aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
102680769  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
102674988  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
102680960  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
102677738  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
102677914  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
102673749  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
102678138  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
102681062  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
102681718  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
102676394  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102681142  uncharacterized protein LOC102681142 isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102675810  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
102681493  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
102680805  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
102677101  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
102678979  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
102671237  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
102677532  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
102672069  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
102675146  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
102674966  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102674581  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102681885  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
102680342  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
102675304  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
102674952  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
102672298  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
102674287  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
102672551  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
102678065  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
102676597  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
adr00010  Glycolysis / Gluconeogenesis
adr00053  Ascorbate and aldarate metabolism
adr00061  Fatty acid biosynthesis
adr00062  Fatty acid elongation
adr00071  Fatty acid degradation
adr00190  Oxidative phosphorylation
adr00220  Arginine biosynthesis
adr00250  Alanine, aspartate and glutamate metabolism
adr00280  Valine, leucine and isoleucine degradation
adr00350  Tyrosine metabolism
adr00470  D-Amino acid metabolism
adr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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