KEGG   PATHWAY: adu00020
Entry
adu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arachis duranensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
adu00020  Citrate cycle (TCA cycle)
adu00020

Module
adu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:adu00020]
adu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:adu00020]
adu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:adu00020]
adu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:adu00020]
adu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:adu00020]
Other DBs
GO: 0006099
Organism
Arachis duranensis [GN:adu]
Gene
107477593  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107496452  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
107458850  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127743918  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
107462855  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
107483416  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
107488796  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
107458809  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
107492226  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
107462018  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107477734  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
107487446  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
127744074  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
107457966  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107458905  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107490063  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
107476297  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
107478783  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
107463935  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
107487414  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
107458884  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
107496143  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
127745761  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
107467518  uncharacterized protein LOC107467518 [KO:K00164] [EC:1.2.4.2]
107486408  uncharacterized protein LOC107486408 [KO:K00164] [EC:1.2.4.2]
107486409  uncharacterized protein LOC107486409 [KO:K00164] [EC:1.2.4.2]
107488160  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
107496348  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
107482987  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [KO:K00658] [EC:2.3.1.61]
107463020  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
107462497  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
107489956  succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
107473805  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
107487854  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
107486162  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107494875  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
107477767  uncharacterized protein LOC107477767 [KO:K00236]
107458255  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
107482462  uncharacterized protein LOC107482462 isoform X1 [KO:K25801]
107481877  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
107479891  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
107466182  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
107466183  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
107473168  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
107468336  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107480540  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
107487600  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
107478388  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
107468023  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
107461046  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
107487214  phosphoenolpyruvate carboxykinase (ATP) 1 isoform X2 [KO:K01610] [EC:4.1.1.49]
107481273  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
107473065  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107491901  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
107488997  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
107465059  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
107468168  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic isoform X1 [KO:K00162] [EC:1.2.4.1]
107485714  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
107482018  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
107466699  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
107467488  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107467865  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
107464762  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
adu00010  Glycolysis / Gluconeogenesis
adu00053  Ascorbate and aldarate metabolism
adu00061  Fatty acid biosynthesis
adu00062  Fatty acid elongation
adu00071  Fatty acid degradation
adu00190  Oxidative phosphorylation
adu00220  Arginine biosynthesis
adu00250  Alanine, aspartate and glutamate metabolism
adu00280  Valine, leucine and isoleucine degradation
adu00350  Tyrosine metabolism
adu00470  D-Amino acid metabolism
adu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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