KEGG   PATHWAY: adu00940
Entry
adu00940                    Pathway                                
Name
Phenylpropanoid biosynthesis - Arachis duranensis
Description
Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
Class
Metabolism; Biosynthesis of other secondary metabolites
Pathway map
adu00940  Phenylpropanoid biosynthesis
adu00940

Module
adu_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:adu00940]
adu_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:adu00940]
Other DBs
GO: 0009699
Organism
Arachis duranensis [GN:adu]
Gene
107467923  phenylalanine ammonia-lyase 2 [KO:K10775] [EC:4.3.1.24]
107476298  phenylalanine ammonia-lyase [KO:K10775] [EC:4.3.1.24]
107461690  phenylalanine ammonia-lyase class 1-like [KO:K10775] [EC:4.3.1.24]
107496075  phenylalanine ammonia-lyase class 3 isoform X2 [KO:K10775] [EC:4.3.1.24]
107493496  phenylalanine ammonia-lyase 1 [KO:K10775] [EC:4.3.1.24]
107458104  trans-cinnamate 4-monooxygenase [KO:K00487] [EC:1.14.14.91]
107467573  cytochrome P450 CYP73A100 [KO:K00487] [EC:1.14.14.91]
107474042  trans-cinnamate 4-monooxygenase [KO:K00487] [EC:1.14.14.91]
107471588  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
107459975  4-coumarate--CoA ligase CCL1 [KO:K01904] [EC:6.2.1.12]
107459985  4-coumarate--CoA ligase CCL1-like isoform X1 [KO:K01904] [EC:6.2.1.12]
107461745  probable CoA ligase CCL7 [KO:K01904] [EC:6.2.1.12]
107477353  4-coumarate--CoA ligase 2-like [KO:K01904] [EC:6.2.1.12]
107477352  4-coumarate--CoA ligase 2-like [KO:K01904] [EC:6.2.1.12]
107477420  4-coumarate--CoA ligase 2-like [KO:K01904] [EC:6.2.1.12]
107487138  4-coumarate--CoA ligase-like 6 [KO:K01904] [EC:6.2.1.12]
107488461  4-coumarate--CoA ligase 2 [KO:K01904] [EC:6.2.1.12]
107482502  LOW QUALITY PROTEIN: 4-coumarate:CoA ligase 1-like [KO:K01904] [EC:6.2.1.12]
107476481  probable CoA ligase CCL7 [KO:K01904] [EC:6.2.1.12]
107463606  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
107461280  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
107463770  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
107464487  spermidine hydroxycinnamoyl transferase isoform X1 [KO:K13065] [EC:2.3.1.133]
107468945  stemmadenine O-acetyltransferase [KO:K13065] [EC:2.3.1.133]
107474816  stemmadenine O-acetyltransferase-like [KO:K13065] [EC:2.3.1.133]
107475054  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
107478904  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
107494459  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
107494461  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
107494473  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
107494576  acyltransferase GLAUCE [KO:K13065] [EC:2.3.1.133]
107494128  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
107492479  caffeoylshikimate esterase isoform X1 [KO:K18368] [EC:3.1.1.-]
107496433  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
107467716  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
107471517  caffeoylshikimate esterase isoform X2 [KO:K18368] [EC:3.1.1.-]
107491307  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
107490385  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
107469696  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
107474667  probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
107479787  caffeoyl-CoA O-methyltransferase 5 [KO:K00588] [EC:2.1.1.104]
107479796  LOW QUALITY PROTEIN: caffeoyl-CoA O-methyltransferase 5 [KO:K00588] [EC:2.1.1.104]
107490158  LOW QUALITY PROTEIN: probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
107463776  cinnamoyl-CoA reductase 1 [KO:K09753] [EC:1.2.1.44]
107459741  cinnamoyl-CoA reductase 1 [KO:K09753] [EC:1.2.1.44]
107478691  aldehyde dehydrogenase family 2 member C4 isoform X1 [KO:K12355] [EC:1.2.1.68]
107478690  aldehyde dehydrogenase family 2 member C4 [KO:K12355] [EC:1.2.1.68]
107490259  aldehyde dehydrogenase family 2 member C4 isoform X2 [KO:K12355] [EC:1.2.1.68]
107490261  aldehyde dehydrogenase family 2 member C4 [KO:K12355] [EC:1.2.1.68]
107490260  aldehyde dehydrogenase family 2 member C4-like [KO:K12355] [EC:1.2.1.68]
107477118  cytochrome P450 84A1-like [KO:K09755] [EC:1.14.-.-]
107478833  cytochrome P450 84A1 [KO:K09755] [EC:1.14.-.-]
107488034  cytochrome P450 84A1 [KO:K09755] [EC:1.14.-.-]
107470102  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
107467418  probable cinnamyl alcohol dehydrogenase [KO:K00083] [EC:1.1.1.195]
107480464  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
107468574  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
107468576  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
107493237  probable cinnamyl alcohol dehydrogenase 6 [KO:K00083] [EC:1.1.1.195]
107468575  probable cinnamyl alcohol dehydrogenase 1 isoform X2 [KO:K00083] [EC:1.1.1.195]
107480351  probable mannitol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
107481678  berberine bridge enzyme-like 13 [KO:K22395] [EC:1.1.1.195]
107483252  berberine bridge enzyme-like 13 [KO:K22395] [EC:1.1.1.195]
107481679  berberine bridge enzyme-like 26 [KO:K22395] [EC:1.1.1.195]
107483135  berberine bridge enzyme-like 13 [KO:K22395] [EC:1.1.1.195]
107483167  berberine bridge enzyme-like 15 [KO:K22395] [EC:1.1.1.195]
107481617  1-Cys peroxiredoxin [KO:K11188] [EC:1.11.1.7 1.11.1.27 3.1.1.-]
107470119  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
107470263  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
107462031  LOW QUALITY PROTEIN: peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
107488005  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
107470963  peroxidase 17 [KO:K00430] [EC:1.11.1.7]
107475437  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
107477749  peroxidase 39 [KO:K00430] [EC:1.11.1.7]
107466751  peroxidase 42 [KO:K00430] [EC:1.11.1.7]
107466056  peroxidase 47 [KO:K00430] [EC:1.11.1.7]
107467673  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
107475687  peroxidase P7-like [KO:K00430] [EC:1.11.1.7]
107469283  peroxidase P7-like [KO:K00430] [EC:1.11.1.7]
107461822  peroxidase 44-like [KO:K00430] [EC:1.11.1.7]
107463671  peroxidase 21 [KO:K00430] [EC:1.11.1.7]
107463520  peroxidase 40 [KO:K00430] [EC:1.11.1.7]
107495400  peroxidase 45 [KO:K00430] [EC:1.11.1.7]
107477014  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
107463897  putative Peroxidase 48 [KO:K00430] [EC:1.11.1.7]
107467037  peroxidase 66 [KO:K00430] [EC:1.11.1.7]
107483830  peroxidase 16 [KO:K00430] [EC:1.11.1.7]
107493236  LOW QUALITY PROTEIN: peroxidase 64-like [KO:K00430] [EC:1.11.1.7]
107495621  peroxidase 46 [KO:K00430] [EC:1.11.1.7]
107468737  cationic peroxidase 2 [KO:K00430] [EC:1.11.1.7]
107468746  cationic peroxidase 2 [KO:K00430] [EC:1.11.1.7]
107471758  peroxidase 44-like [KO:K00430] [EC:1.11.1.7]
107471763  peroxidase 44-like [KO:K00430] [EC:1.11.1.7]
107488733  peroxidase C1C-like [KO:K00430] [EC:1.11.1.7]
107492884  peroxidase 15 [KO:K00430] [EC:1.11.1.7]
107464786  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
107464951  peroxidase 5-like [KO:K00430] [EC:1.11.1.7]
107483676  peroxidase 7 [KO:K00430] [EC:1.11.1.7]
107493108  peroxidase 9 [KO:K00430] [EC:1.11.1.7]
107493111  peroxidase 9-like [KO:K00430] [EC:1.11.1.7]
107494323  peroxidase 44 [KO:K00430] [EC:1.11.1.7]
107466621  peroxidase 65-like [KO:K00430] [EC:1.11.1.7]
107481407  peroxidase 51 [KO:K00430] [EC:1.11.1.7]
107475604  peroxidase P7-like [KO:K00430] [EC:1.11.1.7]
107468403  peroxidase 43 [KO:K00430] [EC:1.11.1.7]
107487450  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
107491009  peroxidase 66-like [KO:K00430] [EC:1.11.1.7]
107460286  peroxidase 16 [KO:K00430] [EC:1.11.1.7]
107491254  peroxidase 11 [KO:K00430] [EC:1.11.1.7]
107492439  peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
107492444  peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
107494801  peroxidase 55 [KO:K00430] [EC:1.11.1.7]
107494816  peroxidase 55 [KO:K00430] [EC:1.11.1.7]
107458151  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
107458152  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
107458153  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
107461475  probable peroxidase 26 [KO:K00430] [EC:1.11.1.7]
107495082  peroxidase 31 [KO:K00430] [EC:1.11.1.7]
107485218  cationic peroxidase 1-like [KO:K00430] [EC:1.11.1.7]
107485222  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
107487572  peroxidase 20 [KO:K00430] [EC:1.11.1.7]
107480746  peroxidase 19 [KO:K00430] [EC:1.11.1.7]
107496954  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
107487775  peroxidase 10 [KO:K00430] [EC:1.11.1.7]
107458785  peroxidase 7 [KO:K00430] [EC:1.11.1.7]
107462414  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
107481758  cationic peroxidase 2 [KO:K00430] [EC:1.11.1.7]
107473776  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
107473786  peroxidase P7-like [KO:K00430] [EC:1.11.1.7]
107473797  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
107487669  peroxidase 51 [KO:K00430] [EC:1.11.1.7]
107496990  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
107473817  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
107470027  peroxidase 25 [KO:K00430] [EC:1.11.1.7]
107477192  lignin-forming anionic peroxidase [KO:K00430] [EC:1.11.1.7]
107483101  peroxidase A2-like [KO:K00430] [EC:1.11.1.7]
107483147  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
107483151  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
107483152  peroxidase 15 [KO:K00430] [EC:1.11.1.7]
107483153  peroxidase A2 [KO:K00430] [EC:1.11.1.7]
107483166  peroxidase 53-like [KO:K00430] [EC:1.11.1.7]
107458613  putative Peroxidase 48 [KO:K00430] [EC:1.11.1.7]
107496850  peroxidase N [KO:K00430] [EC:1.11.1.7]
107485196  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
127739757  peroxidase 47-like [KO:K00430] [EC:1.11.1.7]
127744054  LOW QUALITY PROTEIN: peroxidase 3-like [KO:K00430] [EC:1.11.1.7]
127744258  peroxidase 44-like [KO:K00430] [EC:1.11.1.7]
107483150  peroxidase A2 isoform X1 [KO:K00430] [EC:1.11.1.7]
107487880  UDP-glycosyltransferase 72E1 [KO:K12356] [EC:2.4.1.111]
107487881  anthocyanidin 3-O-glucosyltransferase 5-like isoform X2 [KO:K12356] [EC:2.4.1.111]
107475468  anthocyanidin 3-O-glucosyltransferase 5-like [KO:K12356] [EC:2.4.1.111]
107475624  UDP-glycosyltransferase 72D1-like [KO:K12356] [EC:2.4.1.111]
107475627  anthocyanidin 3-O-glucosyltransferase 5-like [KO:K12356] [EC:2.4.1.111]
Compound
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00223  p-Coumaroyl-CoA
C00315  Spermidine
C00323  Caffeoyl-CoA
C00406  Feruloyl-CoA
C00411  Sinapoyl-CoA
C00423  trans-Cinnamate
C00482  Sinapate
C00540  Cinnamoyl-CoA
C00590  Coniferyl alcohol
C00761  Coniferin
C00811  4-Coumarate
C00852  Chlorogenate
C00903  Cinnamaldehyde
C00933  Sinapine
C01175  1-O-Sinapoyl-beta-D-glucose
C01197  Caffeate
C01494  Ferulate
C01533  Syringin
C02325  Sinapyl alcohol
C02646  4-Coumaryl alcohol
C02666  Coniferyl aldehyde
C02887  Sinapoyl malate
C02947  4-Coumaroylshikimate
C04366  3-(2-Carboxyethenyl)-cis,cis-muconate
C05608  4-Hydroxycinnamyl aldehyde
C05610  Sinapoyl aldehyde
C05619  5-Hydroxyferulic acid
C05627  4-Hydroxystyrene
C05855  4-Hydroxycinnamyl alcohol 4-D-glucoside
C06224  3,4-Dihydroxystyrene
C10428  Anethole
C10434  5-O-Caffeoylshikimic acid
C10452  Estragole
C10453  Eugenol
C10454  Methyleugenol
C10469  Isoeugenol
C10478  Methylisoeugenol
C10945  Caffeic aldehyde
C12203  5-Hydroxyferuloyl-CoA
C12204  5-Hydroxyconiferaldehyde
C12205  5-Hydroxyconiferyl alcohol
C12206  Caffeyl alcohol
C12208  p-Coumaroyl quinic acid
C15804  p-Hydroxyphenyl lignin
C15805  Guaiacyl lignin
C15806  Syringyl lignin
C15807  5-Hydroxy-guaiacyl lignin
C16930  Chavicol
C18069  N1,N5,N10-Tricoumaroyl spermidine
C18070  N1,N5,N10-Tricaffeoyl spermidine
C18071  N1,N5,N10-Triferuloyl spermidine
C18072  N1,N5,N10-Tri(hydroxyferuloyl) spermidine
C18073  N1,N5-Di(hydroxyferuloyl)-N10-sinapoyl spermidine
C20225  Coniferyl acetate
C20464  Isochavicol
C20465  Coumaryl acetate
Reference
  Authors
Nair RB, Bastress KL, Ruegger MO, Denault JW, Chapple C.
  Title
The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis.
  Journal
Plant Cell 16:544-54 (2004)
DOI:10.1105/tpc.017509
Reference
  Authors
Baucher M, Halpin C, Petit-Conil M, Boerjan W.
  Title
Lignin: genetic engineering and impact on pulping.
  Journal
Crit Rev Biochem Mol Biol 38:305-50 (2003)
DOI:10.1080/10409230391036757
Reference
  Authors
Rogers LA, Dubos C, Cullis IF, Surman C, Poole M, Willment J, Mansfield SD, Campbell MM.
  Title
Light, the circadian clock, and sugar perception in the control of lignin biosynthesis.
  Journal
J Exp Bot 56:1651-63 (2005)
DOI:10.1093/jxb/eri162
Reference
  Authors
Whetten R, Sederoff R.
  Title
Lignin Biosynthesis.
  Journal
Plant Cell 7:1001-1013 (1995)
DOI:10.1105/tpc.7.7.1001
Reference
PMID:8972602
  Authors
Lorenzen M, Racicot V, Strack D, Chapple C.
  Title
Sinapic acid ester metabolism in wild type and a sinapoylglucose-accumulating mutant of arabidopsis.
  Journal
Plant Physiol 112:1625-30 (1996)
DOI:10.1104/pp.112.4.1625
Reference
PMID:1477555
  Authors
Chapple CC, Vogt T, Ellis BE, Somerville CR.
  Title
An Arabidopsis mutant defective in the general phenylpropanoid pathway.
  Journal
Plant Cell 4:1413-24 (1992)
DOI:10.1105/tpc.4.11.1413
Reference
  Authors
Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W.
  Title
Genome-wide characterization of the lignification toolbox in Arabidopsis.
  Journal
Plant Physiol 133:1051-71 (2003)
DOI:10.1104/pp.103.026484
Reference
  Authors
Costa MA, Collins RE, Anterola AM, Cochrane FC, Davin LB, Lewis NG.
  Title
An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof.
  Journal
Phytochemistry 64:1097-112 (2003)
DOI:10.1016/S0031-9422(03)00517-X
Reference
  Authors
Meyermans H, Morreel K, Lapierre C, Pollet B, De Bruyn A, Busson R, Herdewijn P, Devreese B, Van Beeumen J, Marita JM, Ralph J, Chen C, Burggraeve B, Van Montagu M, Messens E, Boerjan W.
  Title
Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis.
  Journal
J Biol Chem 275:36899-909 (2000)
DOI:10.1074/jbc.M006915200
Reference
  Authors
Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P.
  Title
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications.
  Journal
Plant Mol Biol 58:229-45 (2005)
DOI:10.1007/s11103-005-5346-5
Reference
  Authors
Li L, Popko JL, Umezawa T, Chiang VL.
  Title
5-hydroxyconiferyl aldehyde modulates enzymatic methylation for syringyl monolignol formation, a new view of monolignol biosynthesis in angiosperms.
  Journal
J Biol Chem 275:6537-45 (2000)
DOI:10.1074/jbc.275.9.6537
Reference
  Authors
Yamauchi K, Yasuda S, Fukushima K.
  Title
Evidence for the biosynthetic pathway from sinapic acid to syringyl lignin using labeled sinapic acid with stable isotope at both methoxy groups in Robinia pseudoacacia and Nerium indicum.
  Journal
J Agric Food Chem 50:3222-7 (2002)
DOI:10.1021/jf011565x
Reference
  Authors
Eckardt NA.
  Title
Probing the mysteries of lignin biosynthesis: the crystal structure of caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase provides new insights.
  Journal
Plant Cell 14:1185-9 (2002)
DOI:10.1105/tpc.140610
Related
pathway
adu00130  Ubiquinone and other terpenoid-quinone biosynthesis
adu00400  Phenylalanine, tyrosine and tryptophan biosynthesis
adu00941  Flavonoid biosynthesis
adu00945  Stilbenoid, diarylheptanoid and gingerol biosynthesis
KO pathway
ko00940   
LinkDB

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