KEGG   PATHWAY: aell00020
Entry
aell00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Arcobacter ellisii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aell00020  Citrate cycle (TCA cycle)
aell00020

Module
aell_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aell00020]
aell_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aell00020]
Other DBs
GO: 0006099
Organism
Arcobacter ellisii [GN:aell]
Gene
AELL_0460  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AELL_0435  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AELL_1103  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AELL_1815  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AELL_1277  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
AELL_1002  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AELL_1001  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AELL_1000  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
AELL_1003  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
AELL_0450  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AELL_0449  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AELL_0451  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
AELL_2340  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AELL_1276  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AELL_0670  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
AELL_0755  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
AELL_0303  oadA1; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
AELL_1494  oadA2; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
AELL_1496  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AELL_0208  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
AELL_0207  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
AELL_0209  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aell00010  Glycolysis / Gluconeogenesis
aell00061  Fatty acid biosynthesis
aell00071  Fatty acid degradation
aell00190  Oxidative phosphorylation
aell00220  Arginine biosynthesis
aell00250  Alanine, aspartate and glutamate metabolism
aell00280  Valine, leucine and isoleucine degradation
aell00350  Tyrosine metabolism
aell00470  D-Amino acid metabolism
aell00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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