KEGG   PATHWAY: aest00020
Entry
aest00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aestuariibaculum sp. YM273
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aest00020  Citrate cycle (TCA cycle)
aest00020

Module
aest_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aest00020]
aest_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aest00020]
aest_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aest00020]
aest_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aest00020]
aest_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aest00020]
Other DBs
GO: 0006099
Organism
Aestuariibaculum sp. YM273 [GN:aest]
Gene
RBH94_02585  citrate synthase [KO:K01647] [EC:2.3.3.1]
RBH94_01015  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RBH94_01020  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
RBH94_00070  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RBH94_07060  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
RBH94_07065  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
RBH94_01570  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
RBH94_14555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBH94_15540  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RBH94_13820  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RBH94_00420  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RBH94_04570  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
RBH94_04565  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
RBH94_04575  succinate dehydrogenase cytochrome b subunit [KO:K00241]
RBH94_11640  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RBH94_09970  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RBH94_01005  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
RBH94_04230  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RBH94_12485  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
RBH94_03030  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
RBH94_07735  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
RBH94_03025  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
RBH94_12595  4Fe-4S binding protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aest00010  Glycolysis / Gluconeogenesis
aest00053  Ascorbate and aldarate metabolism
aest00061  Fatty acid biosynthesis
aest00071  Fatty acid degradation
aest00190  Oxidative phosphorylation
aest00220  Arginine biosynthesis
aest00250  Alanine, aspartate and glutamate metabolism
aest00280  Valine, leucine and isoleucine degradation
aest00350  Tyrosine metabolism
aest00470  D-Amino acid metabolism
aest00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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